Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02513 ATGGCTTCCTTCAGCGGCGATGAGACAGCACCGTTTTTCGGCTTCCTTGGGGCCGCAGCTGCTCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTTCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTTATCATCAGTACTGGCATTAATCCCAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTGGCTGGGCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAGCTTTTCGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTGTATGGTCTCATTGTTGGTATCATCTTGTCTTCTCGTGCTGGTCAGTCTAGAGCTGATTAA 495 0.4889 MASFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02513 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 160 - -
Viun11g02513 164 NCBIfam V-type ATPase subunit C 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Viun11g02513 164 Pfam ATP synthase subunit C 96 154 IPR002379 GO:0015078|GO:0033177|GO:1902600
Viun11g02513 164 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Viun11g02513 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Viun11g02513 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Viun11g02513 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179|GO:0046961|GO:1902600
Viun11g02513 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Viun11g02513 164 FunFam V-type proton ATPase proteolipid subunit 10 161 - -
Viun11g02513 164 Gene3D - 10 161 IPR035921 -
Viun11g02513 164 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Viun11g02513 164 SUPERFAMILY F1F0 ATP synthase subunit C 86 155 IPR035921 -
Viun11g02513 164 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 155 - -
Viun11g02513 164 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02513 Viun-Chr11 38535203 38536998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02513 1 164 Primary Pumps ATPases(2) AT2G16510 98.171 2.00e-111 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02513 K02155 - pda:103718497 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02513 11 38535203 38536998 Viun11g02513 11 38535203 38536998 ECH