Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02508 ATGCGAACCCTTTGCGACGTATGCGAGAGCGCCGCCGCCATTCTCTTCTGCGCCGCCGATGAGGCTGCTCTCTGCTCCGCCTGTGACCAAAAGATCCATATGTGTAACAAACTTGCTAGTAGACACATTCGGGTTGGCCTTGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAATGCACCTGCTTTCTTTTACTGTGAGGTAGATGGTAGTTCGCTGTGTCTGCAATGTGATATGATTGTACATGTTGGTGGTAAAAGGACTCATGAAAGATATCTTCTATTGAGGCAAAGAGTTGAGTTTCCAGGTGATAAACCTGCCCAAATGGAAGAACTAGGGCTGCAACCACTGGATCAAAATGAATTTAGGAGGGATGAAAACCAATCTCTCAAGCTAAATACAAGAGATAGTCAGCAGAATCACAGCATCTTACCTGTTCCAAGACAGGAAAATAATATTGATGGTCATAGAAAAATGGATAAAAAGTTAATTGATCTGAACACCAGGCCATTGCGGTTAAATGGACCAGCACCAAACAACCAGAACAAATCAATGAGGGGAAATAGTTACTTTCATATGAATGAGCTGCATAATGGAGGTCGCTTGAAGTCAATGGTATATACCAAGTTTTCTTAA 642 0.4315 MRTLCDVCESAAAILFCAADEAALCSACDQKIHMCNKLASRHIRVGLADPTDVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGGKRTHERYLLLRQRVEFPGDKPAQMEELGLQPLDQNEFRRDENQSLKLNTRDSQQNHSILPVPRQENNIDGHRKMDKKLIDLNTRPLRLNGPAPNNQNKSMRGNSYFHMNELHNGGRLKSMVYTKFS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02508 213 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Viun11g02508 213 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 149 - -
Viun11g02508 213 FunFam B-box zinc finger protein 19 2 92 - -
Viun11g02508 213 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
Viun11g02508 213 Pfam B-box zinc finger 3 34 IPR000315 GO:0008270
Viun11g02508 213 CDD Bbox1_BBX-like 56 96 - -
Viun11g02508 213 Gene3D Classic Zinc Finger 2 95 - -
Viun11g02508 213 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Viun11g02508 213 SMART bboxneu5 1 47 IPR000315 GO:0008270
Viun11g02508 213 SMART bboxneu5 51 96 IPR000315 GO:0008270
Viun11g02508 213 CDD Bbox1_BBX-like 4 47 - -
Viun11g02508 213 SUPERFAMILY B-box zinc-binding domain 50 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02508 Viun-Chr11 38494870 38497506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02508 1 191 C2C2-CO-like Transcription Factor Family AT2G21320 56.021 7.03e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Viun11g02508 zf-B_box 3.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02508 - - gmx:100818604 358.992