Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02499 ATGGAAGTTGCGGCGGCCAAAGCGCTCAAACCGAGCTTGCGGACAGAGTTCATCTTCCCGCAAGCAATCTGCGACGAGATTTTTTGTTTCAACGCCAACAACATTGTTGTCGGCGAAGATTTCTCCGTCGACGACCTTCTTGACTTTTCCAACGGCGAATTCCAGCTTGGAAAGGATTTCGATGTCTCCGAGGAAGAGGAAGACGAGGAAAAAGACAGCACCTCCGGTTCCTCGCAGGACCGAACCGAAGACGACAGCAATTCCAATTCCACCGCCGCAGGCGGCGCCGGCGATTCAGACTCCGTCTTCGCCGGGGAATTATCAGTTCCTGCGGATGATGTGGCGGACCTGGAGTGGGTTTCGCACTTTGTAGACGATTCTCTGCCTGAGCTTTCTCTTTTGTACCCTGTCCCTCCGGAGCAAACAAGGGTATGGGCCGAACCAAAACCTAGACCGGGCCGGGCCCAAAACGGTTCAGCAATTCCTAGAAGGCCGAGGACCGGAAAGAGTAGGAAGCCCAACGCTCGCGTGTGGTCTTTTACGGTGTCGCCGCCGTCTTTGTGTTTTTCGGTGTTGGCTGGCTCCGTTGAGTTTGGCGAGCCGACGGCTAAAAAGCAGAAGAAAAAGGCCGAGGCCCAAAGTGGGGCCCAGTTTCAGCGACGGTGCAGCCACTGCCAGGTGCAGAAAACGCCGCAGTGGAGGACAGGCCCACTGGGGCCCAAAACACTCTGCAACGCTTGCGGGGTTCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTATAGACCGGCCTGTAGCCCAACTTTCTCCGGTGATATTCACTCAAATAGCCATCGTAAGGTCTTGGAGATGAGGCGTAGAAAGGAGACCAGCGAACCGCAAACCGGTTCAGACCGGACTCAACTGGTCCCAAGCTGTTGA 918 0.5566 MEVAAAKALKPSLRTEFIFPQAICDEIFCFNANNIVVGEDFSVDDLLDFSNGEFQLGKDFDVSEEEEDEEKDSTSGSSQDRTEDDSNSNSTAAGGAGDSDSVFAGELSVPADDVADLEWVSHFVDDSLPELSLLYPVPPEQTRVWAEPKPRPGRAQNGSAIPRRPRTGKSRKPNARVWSFTVSPPSLCFSVLAGSVEFGEPTAKKQKKKAEAQSGAQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKETSEPQTGSDRTQLVPSC 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02499 305 PIRSF Txn_fac_GATA_plant 1 304 IPR016679 GO:0003677|GO:0005634|GO:0045893
Viun11g02499 305 FunFam GATA transcription factor 211 298 - -
Viun11g02499 305 MobiDBLite consensus disorder prediction 283 305 - -
Viun11g02499 305 PANTHER GATA TRANSCRIPTION FACTOR 31 295 - -
Viun11g02499 305 CDD ZnF_GATA 221 278 IPR000679 GO:0006355|GO:0043565
Viun11g02499 305 MobiDBLite consensus disorder prediction 58 103 - -
Viun11g02499 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 277 - -
Viun11g02499 305 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355|GO:0043565
Viun11g02499 305 MobiDBLite consensus disorder prediction 80 96 - -
Viun11g02499 305 SMART GATA_3 216 270 IPR000679 GO:0006355|GO:0043565
Viun11g02499 305 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355|GO:0043565
Viun11g02499 305 Gene3D - 213 292 IPR013088 GO:0006355|GO:0008270
Viun11g02499 305 ProSiteProfiles GATA-type zinc finger domain profile. 220 252 IPR000679 GO:0006355|GO:0043565
Viun11g02499 305 MobiDBLite consensus disorder prediction 144 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02499 Viun-Chr11 38456483 38458268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02499 40 287 C2C2-Gata Transcription Factor Family AT4G36240 44.314 2.63e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun11g02499 GATA 3.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02499 - - gmx:100776188 454.907