Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02487 ATGAAGATTCAGTGTGATGTGTGTCACAAAGAAGTGGCTTCCTTGTTCTGTCCTTCAGATGAAGCAGCTCTCTGCCATGCTTGTGATCGCACCATCCACCATGCCAACAAGCTCGCAGACAAACACAAACGCCTCTCTCTCAGCAACCCCACTTCGAAATCCACCACCACTCTCTGTGATATCTGTCATGAGAAGCGTGCTTATGTCTTCTGCAGAGAAGACAGAGCTCTACTTTGCAGACAATGTGATGTTTCCATCCATGATGTCAACGAACACACCAAGACACACGACAGGTTTCTTCTCACTGGAATAAAGCTCGAAGAAAAAACAAGAACAACCGTTTCAAACGAAAATATTGGTTCTTTTGGTTCTTCTCGCACGCTTTGTGACACGAGCTCGGTTTCAACAAGTAGCATATCTGAGTACTTGATTCAGACCATTCCTGGTTACTGCATGGAAGACCTTTTAGATGCTTCATTTGCTACATCAAATGCTTTCTCTAAGGATTATGAGTTTCCGAATGAAGATGTTCAAGTGAGCATGTGCTCGATCCCACTGCAATCTCAATTTAGCAGTGGTTCCAATCTTTGTCCTCAGTTTGATTCTTTAGTTGGAGTAATTGAAATGCCAAAAGCCAAAGCTGGGGAAGGATACTCCAATTGGGTTCATGATTCTGATTACGCAGCCTACAAAGTTCCCTCGATTACTCATCCTTTAGTAAAAAAAAGTAAACGCTCTCGTTGA 744 0.4301 MKIQCDVCHKEVASLFCPSDEAALCHACDRTIHHANKLADKHKRLSLSNPTSKSTTTLCDICHEKRAYVFCREDRALLCRQCDVSIHDVNEHTKTHDRFLLTGIKLEEKTRTTVSNENIGSFGSSRTLCDTSSVSTSSISEYLIQTIPGYCMEDLLDASFATSNAFSKDYEFPNEDVQVSMCSIPLQSQFSSGSNLCPQFDSLVGVIEMPKAKAGEGYSNWVHDSDYAAYKVPSITHPLVKKSKRSR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02487 247 Gene3D Classic Zinc Finger 1 99 - -
Viun11g02487 247 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Viun11g02487 247 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 184 - -
Viun11g02487 247 CDD Bbox1_BBX-like 5 47 - -
Viun11g02487 247 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Viun11g02487 247 Pfam B-box zinc finger 57 93 IPR000315 GO:0008270
Viun11g02487 247 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Viun11g02487 247 Coils Coil 239 247 - -
Viun11g02487 247 CDD Bbox1_BBX-like 58 101 - -
Viun11g02487 247 SMART bboxneu5 54 101 IPR000315 GO:0008270
Viun11g02487 247 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02487 Viun-Chr11 38370146 38371607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02487 1 168 C2C2-CO-like Transcription Factor Family AT1G75540 46.377 1.03e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Viun11g02487 zf-B_box 4.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02487 - - pvu:PHAVU_011G040800g 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02487 11 38370146 38371607 Viun11g02487 11 38370146 38371607 ECH