Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02481 ATGGCTTCCGATTCTTCTCCGAATTTCAACAACGGTCCTTCTTCCCCCGATGACTCCCTTTCCAGCCCCATCGGCAACACCTTCTCGTCGCCGGGAAGTAGGCGCCGCCGCCGCTCCTCTACTCCCTCCGCATTTGCCACCCCGTCGGAGCGTCGCTCTCGATTTGCCTCCTCCGAAGCCACCCCAACCGCGCCGCGCTCCCGCCATGGCGTCGGCGGAGGTGGGCGTATTCCCCCCACACCTACCTCCACAACAGATGACGCGGGTGCCTCGTCTGACGGCGGCGATGGCTACGACATGGACGACGCCAGGCCCACCTTCGTGTGGGGCACTAGCATAAGCGTGGAAGACGTGAACGATGCGATTCACAGGTTTTTGAGGGACTTTAGGGAAGCGTCTTCTTCGCAGGGTGATGATGACGGGTTGCACTTGCACACCGAAGGGAAGTATGAGAAATTGATCAGACAGGTTATTGAAGTTGAAGGAGATTCTCTTGACGTTAATGCGCGCGACGTGTTTGATCACGACCCTGATTTGTACACCAAGATGGTTAGATACCCTCTTGAGGTGCTTGCTATCTTTGACTTGGTTTTGATGAATATGGTTAGCCGATTGAAGCCCATGTTTGAGAAGCACATTCAAACTCGGATTTTCAATCTCAAAACCTCAACCTCAATGAGAAACTTGAACCCTTCCGATATTGAGAGGATGGTGTCATTGAAAGGAATGATTATAAGGTGTAGTTCAATTATACCTGAAATTAGGGAAGCCATATTTAGGTGTCTTGTGTGTGGATTTTGCTGTGACCCAATTCCTGTGGAGAGAGGACGAATAACGGAGCCCACTAGATGTCTGAGGGAAGAATGTCAATCCAGGAACTCCATGACGCTTGTTCACAACCGATGCAGGTTTGCTGATAAGCAAATTGTGAGGCTCCAGGAGACACCTGATCAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGCTACACGATAAGCTGGTGGATACTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATCTATAGGGCAATGAGTGTTAGGGTTGGGCCAACTCAGAGGACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAGAAGACAGATAAGTCCAGGATGCAGGTAGAGGACTCTATGGATATTGATAGTGGCTCTGGCAGAAATGAAGAGGAAGTTATCTTTGAAGAAGAAAAAGTGGCTCGATTGAAGGAGATCTCTAAACGGCCAGATGTATATGAAATACTGACAAAGTCATTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCATTGAAATTGGCTTCTGGTGCCAGCTTCCGTGGTGATATAAATATTCTCCTTGTTGGTGATCCTGGGACTAGCAAGTCCCAACTACTCCAATACATACACAAATTATCTCCACGTGGCATTTACACCAGTGGAAGGGGAAGCTCTGCAGTTGGATTGACAGCATATGTAGCCAAGGACCCTGAAACAGGAGAAACTGTTCTTGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATCTGTTGTATTGACGAATTTGATAAAATGTCTGAAAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATAATTGCTTCCCTCAATGCTAGGACATCCGTGTTGGCTTGTGCAAATCCAAGTGGTTCAAGATATAATCCTCGCTTGTCTGTCATCGACAACATACACCTTCCACCCACACTTCTGTCCAGGTTTGATTTAATCTACTTGATCCTTGACAAGGCTGATGAGCAGACTGACAGGCGCCTTGCCAAACATATTGTGTCCCTACACTTTGACAATCCCGAGAATATAGAGCAGGATGTGTTGGATCTTTCTACGTTAACAGATTATGTTAGCTATGCCCGAAAGCACATACACCCTCAGCTTTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTGGAAATAAGAAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACGCCGAGGCAGATTGAGAGTCTGATTCGTCTAAGTGAAGCATTGGCTCGGATTCGCTTTTCAGAATGGGTCGAAAAGAATGATGTAACGGAGGCTTTCAGGCTTTTGGAAGTTGCAATGCAGCAGTCTGCAACGGATCACTCTACTGGAACCATTGATATGGATCTTATTACTACTGGAGTGTCGGCAAGTGAGAGGATAAGACGAGAAAGTTTGCTACAAGCAACACGCAACTTAATCATGGAGAAGATGCAGATTGGGGGACCTTCTATGCGGTTATTAGATTTATTGGAAGAATTGAAGAAACAGGAGACTGGTGTTAGCGAAGTTCATCTCAATGATCTAAGAAATGCAATAGGTACCCTGGCTACCGAAGGTTTTGTTACCATGCACGGTGACAGCTTAAAAAGATCTTAA 2511 0.4648 MASDSSPNFNNGPSSPDDSLSSPIGNTFSSPGSRRRRRSSTPSAFATPSERRSRFASSEATPTAPRSRHGVGGGGRIPPTPTSTTDDAGASSDGGDGYDMDDARPTFVWGTSISVEDVNDAIHRFLRDFREASSSQGDDDGLHLHTEGKYEKLIRQVIEVEGDSLDVNARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRLKPMFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGFCCDPIPVERGRITEPTRCLREECQSRNSMTLVHNRCRFADKQIVRLQETPDQIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMQVEDSMDIDSGSGRNEEEVIFEEEKVARLKEISKRPDVYEILTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPENIEQDVLDLSTLTDYVSYARKHIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKNDVTEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERIRRESLLQATRNLIMEKMQIGGPSMRLLDLLEELKKQETGVSEVHLNDLRNAIGTLATEGFVTMHGDSLKRS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02481 836 MobiDBLite consensus disorder prediction 1 101 - -
Viun11g02481 836 FunFam DNA helicase 253 305 - -
Viun11g02481 836 FunFam DNA helicase 406 744 - -
Viun11g02481 836 Pfam MCM P-loop domain 413 635 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun11g02481 836 Gene3D - 253 305 - -
Viun11g02481 836 MobiDBLite consensus disorder prediction 1 64 - -
Viun11g02481 836 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 119 790 IPR031327 GO:0003677|GO:0005524|GO:0032508
Viun11g02481 836 ProSitePatterns MCM family signature. 534 542 IPR018525 GO:0003677|GO:0005524|GO:0006260
Viun11g02481 836 Pfam MCM AAA-lid domain 651 737 IPR041562 -
Viun11g02481 836 CDD MCM4 428 737 - -
Viun11g02481 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 436 751 IPR027417 -
Viun11g02481 836 PRINTS Mini-chromosome maintenance (MCM) protein family signature 526 540 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun11g02481 836 PRINTS Mini-chromosome maintenance (MCM) protein family signature 554 567 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun11g02481 836 PRINTS Mini-chromosome maintenance (MCM) protein family signature 605 613 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun11g02481 836 PRINTS Mini-chromosome maintenance (MCM) protein family signature 578 590 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun11g02481 836 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 481 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun11g02481 836 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 587 604 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Viun11g02481 836 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 441 452 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Viun11g02481 836 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 299 311 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Viun11g02481 836 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 739 748 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Viun11g02481 836 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 248 261 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Viun11g02481 836 SUPERFAMILY Nucleic acid-binding proteins 145 376 IPR012340 -
Viun11g02481 836 Gene3D - 409 743 IPR027417 -
Viun11g02481 836 Pfam MCM N-terminal domain 121 222 IPR027925 -
Viun11g02481 836 ProSiteProfiles MCM family domain profile. 425 631 IPR001208 GO:0003677|GO:0005524|GO:0032508
Viun11g02481 836 Gene3D - 744 831 IPR036388 -
Viun11g02481 836 Gene3D - 112 220 - -
Viun11g02481 836 SMART mcm 222 739 IPR031327 GO:0003677|GO:0005524|GO:0032508
Viun11g02481 836 Pfam MCM OB domain 226 355 IPR033762 -
Viun11g02481 836 Gene3D - 226 365 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02481 Viun-Chr11 38318376 38323948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02481 1 835 Core DNA Replication Machinery Family AT2G16440 73.474 0.0 1245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02481 K02212 - gmx:100782586 1441.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02481 11 38318376 38323948 Viun11g02481 11 38318376 38323948 ECH