Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02474 ATGAAAGAAGGAGTAGTAGGAAGCAACAGAGACATGAGAAGCTCTAAGTCTTACACGCTATTGTTGTTTCTTTTCGTATGGTTCCGCTTGGCCAAGTGTTCATCGTTCAGTGACATGGATGCGTTGCTGAAGATGAAGGACTCCATGAAGGGAAACAAAGCCAAAGACGATGCGCTCAGCGACTGGAAGTTTTCCGCCTCGCTTTCCGCACACTGTTCATTTTCTGGCGTCGAATGCGACCAAGACCTTCGAGTCGTTGCCATCAACGTCTCCTCCGTTCCACTCTTTGGCCACCTTCCGCCGGAGATTGGACAGTTTGACAAACTCCAAAACCTAACCATCTCGCAGGACAACCTCACCGGCGAGCTCCCCAAGGAGCTCGCTGCCCTCACTTCCCTCAAGCTCCTCAACATCTCTCACAACACCTTCTCCGGCAATTTCCCCGGCCAAATCGTTCTTCCCATGACCCAACTGGAGGCCCTCGACGCCTACGACAACAACTTCACCGGACCGCTTCCGGAGGAAATAGTGAAACTGGAGAAACTCCGCTACCTCAAGCTCGACGGAAATTACTTTTCCGGCAGCATACCGGAGAGTTACTCGGAGTTTGAGAGCTTGGAGTTTTTGAGCTTAAGCACCAACAGTTTGTCGGGGAAGATTCCCAAGAGTTTGTCTCGGTTGAAGACGCTGAAGTTTCTAAAACTCGGATACAACAACGCTTACGAAGGTGGGATCCCGCCGGAGTTCGGAGCCATGAAATCGCTGAAATACCTTGACCTCTCTAGCTGCAACCTCAGCGGCGAGATTCCACCGAGTCTGAGCAGTTTGACGAACCTGGACACGTTGTTCTTGCAAATGAACAACCTCACCGGAACCATTCCGTCGGAACTCTCTTCCATGGAGAGTCTCATGTCAATGGATATCTCATTCAACGGTCTCACCGGAGAGATCCCTGAGAGTTTCTCCCAGCTGAGAAACCTCACTCTCATGAACTTCTTCCACAACAAGCTGCGCGGTTCTGTTCCCCTCTTCGTCGGCGAGCTTCCGAATCTGGAAGCGCTGCAGCTCTGGGAGAACAACTTCTCCTTCGTGCTGCCGCAGAATCTGGGCCAAAACGGTAAGTTCAAGTTCTTCGACGTCACGAGCAATCATTTCACCGGGTTGATCCCTCCGGGTCTGTGCAAGAGTGGGAGGTTACAAACCTTCGTCATCACCGATAACTTCTTCCACGGTCCAATCCCCGATGACATTGGAAACTGCAAGTCTCTCCTCAAGATCCGAGCCTCCAATAACTACCTTAGCGGCGCCATTCCGTCGGGAATTTTCAAACTGCCATCCGTCACTATAATCGAGCTCGCCAACAACCGTTTCAACGGCGAACTGCCTCCCGAGATTTCCGGCGATTCTCTCGGGATTCTCACGCTTTCCAACAACTTACTGACGGGGAGAATTCCACCGGCGTTGAAGAACTTGAAGGCACTGCAGACACTCTCACTCGACGCCAACCAGTTGGTTGGAGAAATCCCACCGGAGGTTTTTCTCTTACCAACGCTGACCAACGCCAACATAAGCGGCAACAATCTCACAGGAGAAATCCCAACGACGTTGATTCACTGCATTTCACTCAACCTCGTCGACCTCAGCCGGAACATGCTGGTGGGGGAGATTCCCAAGGGTATGAAAAACCTGAGGAGCTTGGGCGTTTTGAATGTTTCTCAAAACCTGTTAACAGGACCGATCCCCGACGAGATTCGGTTCATGTCCAGCCTCACAACGCTGGATCTCTCCTACAACAATTTCAACGGCAAGCTCCCCACCGGCGGTCAGTTTCTGGCCTTCAGCGATAAATCCTTCGCAGGGAACCCCAATCTCTGCTCCTCCCGCTCTTGCCCTAGTTCCTCCATGTACCCAGACGACGCCCTGCGAAAAAGGCGCGGCCCGTTGAGTTCGAAATCGACGAGGGTGATAATAACCGTGATTGCACTGGCCACCGCGGCGCTGCTGGTGGCAGTGACGGTGTACATGATGCGAAGGAGGAAGCTCCTCCGGGCGATGACGTGGAAGCTGACGGCGTTCCAGCGGCTGAACTTGAAAGCGGAGGACGTGGTGGAGTGTCTGAAGGAGGAGAACATAATCGGAAAAGGAGGTGCGGGGATCGTGTACCGCGGGTCCATGCCGAACGGAACCGACGTGGCCATAAAGCGGCTGGTCGGAGCGGGTAGCGGGAGGAACGATTACGGGTTCAGAGCAGAAATCGAGACGCTGGGGAAGATAAGGCACAGGAATATAATGAGGCTTCTGGGTTACGTGTCGAACAAGGAGACGAACTTGCTGCTCTACGAGTACATGCCGAATGGGAGCTTAGGGGAGTGGCTGCATGGGGCGAAGGGAGGGCACTTAAGGTGGGAGATGAGGTTCAAGATTGCAGTGGAAGCTGCGAGAGGACTCTGTTACTTGCACCATGATTGTTCTCCTCTCATCATTCACAGAGACGTCAAATCCAATAACATATTGCTCGACGCCGATTTCGAGGCCCATGTCGCCGATTTCGGACTCGCCAAGTTCCTCCATGATCCCGGTGCCTCTCAGTCCATGTCCTCCATCGCCGGCTCCTATGGCTACATTGCCCCAGAGTATGCATACACGTTGAAAGTGGACGAGAAAAGTGATGTGTACAGTTTCGGGGTGGTGCTGTTGGAGCTGATAATAGGGAGGAAGCCAGTGGGGGAGTTTGGAGATGGAGTGGACATCGTTGGATGGGTCAACAAGACTCGAACGGAGATATCTCAGCCGTCGGATGCAGCGTTGGTGTTGGCAGTGGTGGACCCAAGGCTCAGTGGGTATCCATTGACAAGTGTCATTTACATGTTCAACATTGCTATGATGTGTGTTAGGGAAATGGGCCCAGCCAGGCCCACCATGAGGGAAGTCGTTCATATGCTCACCAATCCTCCTCACTCCACCACTCACACCCACACTCACAACCTCATTAATCTCTAA 3000 0.5283 MKEGVVGSNRDMRSSKSYTLLLFLFVWFRLAKCSSFSDMDALLKMKDSMKGNKAKDDALSDWKFSASLSAHCSFSGVECDQDLRVVAINVSSVPLFGHLPPEIGQFDKLQNLTISQDNLTGELPKELAALTSLKLLNISHNTFSGNFPGQIVLPMTQLEALDAYDNNFTGPLPEEIVKLEKLRYLKLDGNYFSGSIPESYSEFESLEFLSLSTNSLSGKIPKSLSRLKTLKFLKLGYNNAYEGGIPPEFGAMKSLKYLDLSSCNLSGEIPPSLSSLTNLDTLFLQMNNLTGTIPSELSSMESLMSMDISFNGLTGEIPESFSQLRNLTLMNFFHNKLRGSVPLFVGELPNLEALQLWENNFSFVLPQNLGQNGKFKFFDVTSNHFTGLIPPGLCKSGRLQTFVITDNFFHGPIPDDIGNCKSLLKIRASNNYLSGAIPSGIFKLPSVTIIELANNRFNGELPPEISGDSLGILTLSNNLLTGRIPPALKNLKALQTLSLDANQLVGEIPPEVFLLPTLTNANISGNNLTGEIPTTLIHCISLNLVDLSRNMLVGEIPKGMKNLRSLGVLNVSQNLLTGPIPDEIRFMSSLTTLDLSYNNFNGKLPTGGQFLAFSDKSFAGNPNLCSSRSCPSSSMYPDDALRKRRGPLSSKSTRVIITVIALATAALLVAVTVYMMRRRKLLRAMTWKLTAFQRLNLKAEDVVECLKEENIIGKGGAGIVYRGSMPNGTDVAIKRLVGAGSGRNDYGFRAEIETLGKIRHRNIMRLLGYVSNKETNLLLYEYMPNGSLGEWLHGAKGGHLRWEMRFKIAVEAARGLCYLHHDCSPLIIHRDVKSNNILLDADFEAHVADFGLAKFLHDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWVNKTRTEISQPSDAALVLAVVDPRLSGYPLTSVIYMFNIAMMCVREMGPARPTMREVVHMLTNPPHSTTHTHTHNLINL 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02474 999 SUPERFAMILY L domain-like 331 625 - -
Viun11g02474 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 675 782 - -
Viun11g02474 999 Gene3D Transferase(Phosphotransferase) domain 1 783 996 - -
Viun11g02474 999 SMART serkin_6 706 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02474 999 FunFam Leucine-rich repeat receptor-like protein kinase 35 198 - -
Viun11g02474 999 ProSiteProfiles Protein kinase domain profile. 706 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02474 999 Pfam Protein tyrosine and serine/threonine kinase 707 979 IPR001245 GO:0004672|GO:0006468
Viun11g02474 999 Gene3D Ribonuclease Inhibitor 240 344 IPR032675 -
Viun11g02474 999 SMART LRR_typ_2 444 468 IPR003591 -
Viun11g02474 999 SMART LRR_typ_2 203 227 IPR003591 -
Viun11g02474 999 SMART LRR_typ_2 491 515 IPR003591 -
Viun11g02474 999 SMART LRR_typ_2 276 300 IPR003591 -
Viun11g02474 999 SMART LRR_typ_2 587 610 IPR003591 -
Viun11g02474 999 SMART LRR_typ_2 252 275 IPR003591 -
Viun11g02474 999 SMART LRR_typ_2 348 372 IPR003591 -
Viun11g02474 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 783 997 - -
Viun11g02474 999 Pfam Leucine rich repeat 278 337 IPR001611 GO:0005515
Viun11g02474 999 Gene3D Phosphorylase Kinase; domain 1 672 782 - -
Viun11g02474 999 Pfam Leucine rich repeat N-terminal domain 37 80 IPR013210 -
Viun11g02474 999 SUPERFAMILY RNI-like 88 410 - -
Viun11g02474 999 FunFam LRR receptor-like serine/threonine-protein kinase EFR 345 635 - -
Viun11g02474 999 Gene3D Ribonuclease Inhibitor 154 239 IPR032675 -
Viun11g02474 999 Gene3D Ribonuclease Inhibitor 345 634 IPR032675 -
Viun11g02474 999 Pfam Leucine Rich Repeat 254 276 IPR001611 GO:0005515
Viun11g02474 999 PANTHER RECEPTOR-LIKE PROTEIN 55 365 985 - -
Viun11g02474 999 Gene3D Ribonuclease Inhibitor 37 153 IPR032675 -
Viun11g02474 999 SUPERFAMILY Protein kinase-like (PK-like) 696 981 IPR011009 -
Viun11g02474 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Viun11g02474 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 240 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02474 Viun-Chr11 38278540 38282252 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02474 33 990 Receptor kinase-like Gene Family AT1G75820 61.498 0.0 1202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun11g02474 PK_Tyr_Ser-Thr 6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02474 K00924 - gmx:732625 1640.55