LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g02443	ATGTTGCATTGTCTCAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATGACAGTGTTGGAAAGACAAAGGGAAGCAACCATGAAGTGGCAACACCACCATCACGACAATCACCAACCTTACTGTTCCGCTACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCCAACAACCTTCCTCAGAGTCAGGGCTTGGCCATGGCGCGTGAGCGTGATGATTCCGCGCTCTCTCAGGTGTTGGCTCATTCTCTCAAACCCGACCCGGGTCTCTGCCCCGAATCGGACAACGGATTCGGATCCTCTTCCGGTTTTTTACCCAAGGAAAACAATAAGAAGAGGAAGGCGCTGAACTGCAAGGTTGCTGCGGAGAGTGATAACAAAGAGAAGAGAGTGAAAGGAAGTGGTGAGGAAGGAGAATCCAGAGTGACAAACCAAACCGGCAACAGAAACGGCAAATCCAACGCAAATAAGAACAACAGAGAAACCTCTGCGGATTCTTCGAAAGGCTCCGAGGTTCAGAACCAGAAGCGCGAGTACATTCATGTCCGAGCGCGTCGTGGCCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTCAGAAGGGAGAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAACGACAAGTCGAGTTCTTGTCAATGAAATTAGCGGCTGTAAATCCAAGCATTGACGAACTGTTTGCCAGAGAGGTGTTTCCTTCATGTGGTCAAGGTTTACCCAACATTGGGATGGCATCGGATATGAGTATGTGTAACAACCCCTCGTATGTTCAGTTGAATTCGACACAGCAACTTGTATCATGTTTTGGTGGATTAATAAATAACGTGGGGATAAGCCCTCCGAATGTGGGAGTTCGAAGGAACCTTAGTACTACTACTACACATGTACCTTTGCCCGAAGCGTTTATTGACTCGTCCTGTTTCACTCAAATTCTACCCTCTTCCAATTGGGAAGGTGATTTTCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGAGAGCATCATCATCATCTTTTCCTTCTCAGCCATTTACAGGTAGCTACAAATTTATGACTTGTCAAATCACTGTTTTTTTCTAA	1185	0.4557	MLHCLNGSGNLGASCSDMTVLERQREATMKWQHHHHDNHQPYCSATEFHVNLVFSSSSNNLPQSQGLAMARERDDSALSQVLAHSLKPDPGLCPESDNGFGSSSGFLPKENNKKRKALNCKVAAESDNKEKRVKGSGEEGESRVTNQTGNRNGKSNANKNNRETSADSSKGSEVQNQKREYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPSIDELFAREVFPSCGQGLPNIGMASDMSMCNNPSYVQLNSTQQLVSCFGGLINNVGISPPNVGVRRNLSTTTTHVPLPEAFIDSSCFTQILPSSNWEGDFQSLYNVAFDQGRASSSSFPSQPFTGSYKFMTCQITVFF	394

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun11g02443	394	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	190	240	IPR011598	GO:0046983
Viun11g02443	394	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	188	260	IPR036638	GO:0046983
Viun11g02443	394	CDD	bHLH_AtBPE_like	180	259	-	-
Viun11g02443	394	Gene3D	-	187	261	IPR036638	GO:0046983
Viun11g02443	394	MobiDBLite	consensus disorder prediction	109	139	-	-
Viun11g02443	394	MobiDBLite	consensus disorder prediction	140	172	-	-
Viun11g02443	394	FunFam	Basic helix-loop-helix transcription factor	187	259	-	-
Viun11g02443	394	PANTHER	STEROL REGULATORY ELEMENT-BINDING PROTEIN	94	283	IPR024097	GO:0006355
Viun11g02443	394	Pfam	Helix-loop-helix DNA-binding domain	194	241	IPR011598	GO:0046983
Viun11g02443	394	MobiDBLite	consensus disorder prediction	88	177	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g02443	Viun-Chr11	38079176	38081274	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g02443	5	360	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G34530	38.889	2.92e-54	181

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Viun11g02443		HLH	3.6e-06	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g02443	-		-	vun:114168601	781.556

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