Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun11g02441 | ATGTTGCATTGTCTCAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATGACAGTGTTGGAAAGACAAAGGGAAGCAACCATGAAGTGGCAACACCACCATCACGACAATCACCAACCTTACTGTTCCGCTACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCCAACAACCTTCCTCAGAGTCAGGGCTTGGCCATGGCGCGTGAGCGTGATGATTCCGCGCTCTCTCAGGTGTTGGCTCATTCTCTCAAACCCGACCCGGGTCTCTGCCCCGAATCGGACAACGGATTCGGATCCTCTTCCGGTTTTTTACCCAAGGAAAACAATAAGAAGAGGAAGGCGCTGAACTGCAAGGTTGCTGCGGAGAGTGATAACAAAGAGAAGAGAGTGAAAGGAAGTGGTGAGGAAGGAGAATCCAGAGTGACAAACCAAACCGGCAACAGAAACGGCAAATCCAACGCAAATAAGAACAACAGAGAAACCTCTGCGGATTCTTCGAAAGGCTCCGAGGTTCAGAACCAGAAGCGCGAGTACATTCATGTCCGAGCGCGTCGTGGCCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTCAGAAGGGAGAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAACGACAAGTCGAGTTCTTGTCAATGAAATTAGCGGCTGTAAATCCAAGCATTGACGAACTGTTTGCCAGAGAGGTGTTTCCTTCATGTGGTCAAGGTTTACCCAACATTGGGATGGCATCGGATATGAGTATGTGTAACAACCCCTCGTATGTTCAGTTGAATTCGACACAGCAACTTGTATCATGTTTTGGTGGATTAATAAATAACGTGGGGATAAGCCCTCCGAATGTGGGAGTTCGAAGGAACCTTAGTACTACTACTACACATGTACCTTTGCCCGAAGCGTTTATTGACTCGTCCTGTTTCACTCAAATTCTACCCTCTTCCAATTGGGAAGGTGATTTTCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGAGAGCATCATCATCATCTTTTCCTTCTCAGCCATTTACAGAGTAG | 1146 | 0.4625 | MLHCLNGSGNLGASCSDMTVLERQREATMKWQHHHHDNHQPYCSATEFHVNLVFSSSSNNLPQSQGLAMARERDDSALSQVLAHSLKPDPGLCPESDNGFGSSSGFLPKENNKKRKALNCKVAAESDNKEKRVKGSGEEGESRVTNQTGNRNGKSNANKNNRETSADSSKGSEVQNQKREYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPSIDELFAREVFPSCGQGLPNIGMASDMSMCNNPSYVQLNSTQQLVSCFGGLINNVGISPPNVGVRRNLSTTTTHVPLPEAFIDSSCFTQILPSSNWEGDFQSLYNVAFDQGRASSSSFPSQPFTE | 381 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun11g02441 | 381 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 190 | 240 | IPR011598 | GO:0046983 | |
Viun11g02441 | 381 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 94 | 283 | IPR024097 | GO:0006355 | |
Viun11g02441 | 381 | CDD | bHLH_AtBPE_like | 180 | 259 | - | - | |
Viun11g02441 | 381 | Pfam | Helix-loop-helix DNA-binding domain | 194 | 241 | IPR011598 | GO:0046983 | |
Viun11g02441 | 381 | MobiDBLite | consensus disorder prediction | 109 | 139 | - | - | |
Viun11g02441 | 381 | MobiDBLite | consensus disorder prediction | 140 | 172 | - | - | |
Viun11g02441 | 381 | FunFam | Basic helix-loop-helix transcription factor | 187 | 259 | - | - | |
Viun11g02441 | 381 | MobiDBLite | consensus disorder prediction | 88 | 177 | - | - | |
Viun11g02441 | 381 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 188 | 260 | IPR036638 | GO:0046983 | |
Viun11g02441 | 381 | Gene3D | - | 187 | 261 | IPR036638 | GO:0046983 | |
Viun11g02441 | 381 | SMART | finulus | 196 | 246 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun11g02441 | Viun-Chr11 | 38079176 | 38081739 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun11g02441 | 5 | 304 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G34530 | 41.124 | 1.52e-54 | 181 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Viun11g02441 | HLH | 3.4e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun11g02441 | - | - | vun:114168601 | 751.895 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun11g02441 | 11 | 38079176 | 38081739 | Viun11g02441 | 11 | 38079176 | 38081739 | ECH | |
Viun11g02441 | 11 | 38079176 | 38081739 | Viun2g01983 | 2 | 28381085 | 28382684 | ECH |