Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02441 ATGTTGCATTGTCTCAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATGACAGTGTTGGAAAGACAAAGGGAAGCAACCATGAAGTGGCAACACCACCATCACGACAATCACCAACCTTACTGTTCCGCTACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCCAACAACCTTCCTCAGAGTCAGGGCTTGGCCATGGCGCGTGAGCGTGATGATTCCGCGCTCTCTCAGGTGTTGGCTCATTCTCTCAAACCCGACCCGGGTCTCTGCCCCGAATCGGACAACGGATTCGGATCCTCTTCCGGTTTTTTACCCAAGGAAAACAATAAGAAGAGGAAGGCGCTGAACTGCAAGGTTGCTGCGGAGAGTGATAACAAAGAGAAGAGAGTGAAAGGAAGTGGTGAGGAAGGAGAATCCAGAGTGACAAACCAAACCGGCAACAGAAACGGCAAATCCAACGCAAATAAGAACAACAGAGAAACCTCTGCGGATTCTTCGAAAGGCTCCGAGGTTCAGAACCAGAAGCGCGAGTACATTCATGTCCGAGCGCGTCGTGGCCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTCAGAAGGGAGAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAACGACAAGTCGAGTTCTTGTCAATGAAATTAGCGGCTGTAAATCCAAGCATTGACGAACTGTTTGCCAGAGAGGTGTTTCCTTCATGTGGTCAAGGTTTACCCAACATTGGGATGGCATCGGATATGAGTATGTGTAACAACCCCTCGTATGTTCAGTTGAATTCGACACAGCAACTTGTATCATGTTTTGGTGGATTAATAAATAACGTGGGGATAAGCCCTCCGAATGTGGGAGTTCGAAGGAACCTTAGTACTACTACTACACATGTACCTTTGCCCGAAGCGTTTATTGACTCGTCCTGTTTCACTCAAATTCTACCCTCTTCCAATTGGGAAGGTGATTTTCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGAGAGCATCATCATCATCTTTTCCTTCTCAGCCATTTACAGAGTAG 1146 0.4625 MLHCLNGSGNLGASCSDMTVLERQREATMKWQHHHHDNHQPYCSATEFHVNLVFSSSSNNLPQSQGLAMARERDDSALSQVLAHSLKPDPGLCPESDNGFGSSSGFLPKENNKKRKALNCKVAAESDNKEKRVKGSGEEGESRVTNQTGNRNGKSNANKNNRETSADSSKGSEVQNQKREYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPSIDELFAREVFPSCGQGLPNIGMASDMSMCNNPSYVQLNSTQQLVSCFGGLINNVGISPPNVGVRRNLSTTTTHVPLPEAFIDSSCFTQILPSSNWEGDFQSLYNVAFDQGRASSSSFPSQPFTE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02441 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 240 IPR011598 GO:0046983
Viun11g02441 381 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 94 283 IPR024097 GO:0006355
Viun11g02441 381 CDD bHLH_AtBPE_like 180 259 - -
Viun11g02441 381 Pfam Helix-loop-helix DNA-binding domain 194 241 IPR011598 GO:0046983
Viun11g02441 381 MobiDBLite consensus disorder prediction 109 139 - -
Viun11g02441 381 MobiDBLite consensus disorder prediction 140 172 - -
Viun11g02441 381 FunFam Basic helix-loop-helix transcription factor 187 259 - -
Viun11g02441 381 MobiDBLite consensus disorder prediction 88 177 - -
Viun11g02441 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 260 IPR036638 GO:0046983
Viun11g02441 381 Gene3D - 187 261 IPR036638 GO:0046983
Viun11g02441 381 SMART finulus 196 246 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02441 Viun-Chr11 38079176 38081739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02441 5 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 41.124 1.52e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun11g02441 HLH 3.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02441 - - vun:114168601 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02441 11 38079176 38081739 Viun11g02441 11 38079176 38081739 ECH
Viun11g02441 11 38079176 38081739 Viun2g01983 2 28381085 28382684 ECH