Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02440 ATGTTGCATTGTCTCAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATGACAGTGTTGGAAAGACAAAGGGAAGCAACCATGAAGTGGCAACACCACCATCACGACAATCACCAACCTTACTGTTCCGCTACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCCAACAACCTTCCTCAGAGTCAGGGCTTGGCCATGGCGCGTGAGCGTGATGATTCCGCGCTCTCTCAGGTGTTGGCTCATTCTCTCAAACCCGACCCGGGTCTCTGCCCCGAATCGGACAACGGATTCGGATCCTCTTCCGGTTTTTTACCCAAGGAAAACAATAAGAAGAGGAAGGCGCTGAACTGCAAGGTTGCTGCGGAGAGTGATAACAAAGAGAAGAGAGTGAAAGGAAGTGGTGAGGAAGGAGAATCCAGAGTGACAAACCAAACCGGCAACAGAAACGGCAAATCCAACGCAAATAAGAACAACAGAGAAACCTCTGCGGATTCTTCGAAAGGCTCCGAGGTTCAGAACCAGAAGCGCGAGTACATTCATGTCCGAGCGCGTCGTGGCCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTCAGAAGGGAGAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAACGACAAGTCGAGTTCTTGTCAATGAAATTAGCGGCTGTAAATCCAAGCATTGACGAACTGTTTGCCAGAGAGGTGTTTCCTTCATGTGGTCAAGGTTTACCCAACATTGGGATGGCATCGGATATGAGTATGTGTAACAACCCCTCGTATGTTCAGTTGAATTCGACACAGCAACTTGTATCATGTTTTGGTGGATTAATAAATAACGTGGGGATAAGCCCTCCGAATGTGGGAGTTCGAAGGAACCTTAGTACTACTACTACACATGTACCTTTGCCCGAAGCGTTTATTGACTCGTCCTGTTTCACTCAAATTCTACCCTCTTCCAATTGGGAAGGTGATTTTCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGAGAGCATCATCATCATCTTTTCCTTCTCAGCCATTTACAGGTGTAGTTGAAATTAGCAATCCGAAGATGGAGATGTAA 1179 0.4597 MLHCLNGSGNLGASCSDMTVLERQREATMKWQHHHHDNHQPYCSATEFHVNLVFSSSSNNLPQSQGLAMARERDDSALSQVLAHSLKPDPGLCPESDNGFGSSSGFLPKENNKKRKALNCKVAAESDNKEKRVKGSGEEGESRVTNQTGNRNGKSNANKNNRETSADSSKGSEVQNQKREYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPSIDELFAREVFPSCGQGLPNIGMASDMSMCNNPSYVQLNSTQQLVSCFGGLINNVGISPPNVGVRRNLSTTTTHVPLPEAFIDSSCFTQILPSSNWEGDFQSLYNVAFDQGRASSSSFPSQPFTGVVEISNPKMEM 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02440 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 240 IPR011598 GO:0046983
Viun11g02440 392 CDD bHLH_AtBPE_like 180 259 - -
Viun11g02440 392 MobiDBLite consensus disorder prediction 109 139 - -
Viun11g02440 392 MobiDBLite consensus disorder prediction 140 172 - -
Viun11g02440 392 FunFam Basic helix-loop-helix transcription factor 187 259 - -
Viun11g02440 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 260 IPR036638 GO:0046983
Viun11g02440 392 MobiDBLite consensus disorder prediction 88 177 - -
Viun11g02440 392 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 94 283 IPR024097 GO:0006355
Viun11g02440 392 Pfam Helix-loop-helix DNA-binding domain 194 241 IPR011598 GO:0046983
Viun11g02440 392 Gene3D - 187 261 IPR036638 GO:0046983
Viun11g02440 392 SMART finulus 196 246 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02440 Viun-Chr11 38079176 38081742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02440 5 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 40.762 2.36e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun11g02440 HLH 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02440 - - vun:114168601 754.207