Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02439 ATGGCTTCAAGCTCTCTCACCAAGCAAAAGCCTTCTGAGTCCTCTTGGACCCAAAAACAGAACAAGCTGTTTGAGAAAGCACTTGCCAAATATGACAAGGATACCCCTGATCGCTGGCAGAATGTGGCTGCAGCAGTTGGTGACAAAACACCTGATGAAGTTAAGAAACACTATGAGATCCTCGTTGAGGATGTCAGACACATTGAATCTGGTCGTGTTCCTCTTCCCAAATACAGGTCCACCGGAAGCAGCAGCACCACCACCACCAACAATGTTGATGATGGAGACAAGCTTATGAAGTATCTCAAGCTGAATTGA 318 0.4623 MASSSLTKQKPSESSWTQKQNKLFEKALAKYDKDTPDRWQNVAAAVGDKTPDEVKKHYEILVEDVRHIESGRVPLPKYRSTGSSSTTTTNNVDDGDKLMKYLKLN 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02439 105 CDD SANT 15 58 IPR001005 -
Viun11g02439 105 MobiDBLite consensus disorder prediction 77 93 - -
Viun11g02439 105 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Viun11g02439 105 FunFam Transcription factor SRM1 8 75 - -
Viun11g02439 105 Gene3D - 7 75 - -
Viun11g02439 105 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 88 IPR044636 GO:0003700
Viun11g02439 105 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Viun11g02439 105 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Viun11g02439 105 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Viun11g02439 105 MobiDBLite consensus disorder prediction 74 93 - -
Viun11g02439 105 SMART sant 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02439 Viun-Chr11 38068113 38069794 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun11g02439 Myb_DNA-binding 3.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02439 - - gmx:100798314 156.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02439 11 38068113 38069794 Viun11g02439 11 38068113 38069794 ECH
Viun11g02439 11 38068113 38069794 Viun2g01958 2 28173977 28176329 ECH