Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02438 ATGGCAGCAGCTGATGTTGAGTTCAGATGTTTCATCGGTGGCCTTGCATGGGCCACTGACGGTGATTCTTTGGAGAAAGCCTTCTCTGTATACGGCGAAGTCCTAGAATCGAAGATTATCAACGATCGTGAGACTGGAAGGTCTAGGGGTTTTGGATTCGTGACCTTTTCCACCGAGAAGGCCATGAGAGATGCGATCGAAGGAATGAACGGTCAGAACCTTGACGGTCGGAACATTACCGTGAATGAAGCTCAGTCCCGTGGTTCTGGCGGAGGCGGCGGTGGCCGTGGAGGTGGTGGATATGGAGGTGGTGGTGGATACAACCGTGGAGGAGGTGGATACGGTGGTGGAGGGGGATATGGTGGCGGCGGTGGATATGGTGGCCGACGTGAAGGAGGAGGAGGAGGATACAGCCGTAATGGTGGTGGTTATGGCGGAAGTGGTGGTTATGGTGGTGGAAGAGACCGTGGTTATGGTGATGGTGGATCCCGCTCTCGTGGCGGTGACGGTGGAGACGGTAGCTGGAACTAG 531 0.5556 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEKAMRDAIEGMNGQNLDGRNITVNEAQSRGSGGGGGGRGGGGYGGGGGYNRGGGGYGGGGGYGGGGGYGGRREGGGGGYSRNGGGYGGSGGYGGGRDRGYGDGGSRSRGGDGGDGSWN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02438 176 SMART rrm1_1 9 82 IPR000504 GO:0003723
Viun11g02438 176 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Viun11g02438 176 MobiDBLite consensus disorder prediction 118 176 - -
Viun11g02438 176 MobiDBLite consensus disorder prediction 73 87 - -
Viun11g02438 176 PANTHER GEO13361P1-RELATED 4 161 - -
Viun11g02438 176 CDD RRM2_NsCP33_like 9 84 - -
Viun11g02438 176 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Viun11g02438 176 Gene3D - 2 119 IPR012677 -
Viun11g02438 176 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Viun11g02438 176 MobiDBLite consensus disorder prediction 72 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02438 Viun-Chr11 38063445 38064530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02438 2 88 Eukaryotic Initiation Factors Gene Family AT2G23350 31.818 3.57e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02438 - K13195 ccaj:109800369 158.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02438 11 38063445 38064530 Viun11g02438 11 38063445 38064530 ECH