Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02437 ATGTTTGTTTCTTCTCAAAAATACAACCCCTACTTTCCCTGCTCCTCGTTTCCACTGCACAACCCAACAACAACAACATGCACCATTTTCAATTGCCAAAACCCAAAGGAGCATCACTCCATTCTCCGGAAGCACAATTCCAAATCCACCGCCTATCTCCTTCAGCATCTCGCTCTCAAAGATGGGGTACCCATTTCCACTTCCATTCCCAAACCAAGCGAGCTTCTAGACCCAATGCCCCACGATGAGAAAGTGAAGGTTTTGGAGCTTTCCCTCGTCAGAAAAAGGACCCCTCAGTTTCCCGGTTCCATCTACGCTCAATCTCCCAGCGACCCCGATGTGGGTTCTTCTCTGCCCCCTATCCGCACCCTCTTTCAATCAGGTGCTGACCCTGATGATAAACATGAGAAGGAAGAGGAGGAGGAGGAGATGATTTTGCGCGCTCTCGAGATTCGAAGAAAGGTCACTGAAGAGGTTTTCAAAGAAGCCATGCGGAAGGGAAAGTTTGGAATCACCTACACTACCAATTTGACTGGCAGGTTATCCGGCTTTCTGGATCACATCATGATTGAAGCTGCTAACTTGAAAAGATTGCCTGGGTTTTCAAACTCCTCCTTCAATTTACGCGCCAAAACTGTTATTGATGAGTCTAAAGTTGTGCCACTTATTAGATGGTTGAAGCACAATGCACTGTCGTATCCCCGGATAGCGAAGATCATTTTGAAGTCAAGAGGAAAACCTGAGTCCATAAGAAGTTTTGTCATGTGGTTGAAATCGGTACGTGTGAAAGGTGAGTTTCTTGGTGTTGTAATGTTGAAGGCTGGAGATGATATTTTGCAACGCAGACATGAGGAGCTGGATGAGATTGTTCAGTATTTGGAGTCCAATGGAGTAAGGAGGGAGTGGATGGGTTATGTCATTAGTCGTTGTCCTCAGTTATTGTCTTACAGCTTAGAAGAAGTGAAGACTCGTACACATTTCTTCCTAGATATGGGTTTAAATGAGAAGGATTTTGGGACAATGGTTTTTGATTTTCCTAGAGTGCTTGGTTACTATTCTCTGGAAGAAATGAATGAAAAGGTTAATTACTTAAAAGAATTTGGGCTTCAACTTGAGGATGTTGGCAAATTGCTTGCATTTAGGCCACAATTAATGGCGTGCAGTATTGAGGAACATTGGAAGCCTCTTGTAAAGTATCTGTATTATTATGGGATCACTCGAGATGGCATGAAGAGGATGCTTATCATTAAACCAATGGTCTTTTGTGCTGACTTGGAGAAGACTATTGTGCCAAAGGTAAAATTTTTTGAGGACATAGGGGTTCACAATGAAGGGATTGGCAACATGCTTGTGAAGTTTCCACCTCTACTCACTTACAGCCTCTACAAGAAAATTAGACCAGTGGTCATATTCTTGATGACCAAAGCTGGAGTCACGGAGAAAGATATTGGCAAGGTTGTGGCTCTTGGACCTGAGCTCTTGGGATGCAATATAGTACATAAGCTTGATGTGAATGTAAAATATTTTTTATCTCTTGGCATACGTCTTCGGCAATTGGGTGAGATGATTACTGATTTCCCGTTGCTGCTAAGATACAATCCAGATGTCCTTCGTCCCAAGTATATTTATTTGCGAAAATCCATGATCAGGCCTTTGGAAGATGTCATTGAGTTTCCAAGGTTTTTCAGTTATTCTCTCGAGGGTCGAATCATCCCAAGGCACAAGGTTCTAGTGGAGAACCATATTAATATTAAGCTGAGATATATGTTGGCGTGCACTGATGAAGAATTCCACAAAATGGTCAAGGACTTAATTGGAAAGCGCAGAAAATTTGAATCTGCTGTTACCGAAGATATTTCTACACCCCAGGCATAA 1875 0.4267 MFVSSQKYNPYFPCSSFPLHNPTTTTCTIFNCQNPKEHHSILRKHNSKSTAYLLQHLALKDGVPISTSIPKPSELLDPMPHDEKVKVLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPIRTLFQSGADPDDKHEKEEEEEEMILRALEIRRKVTEEVFKEAMRKGKFGITYTTNLTGRLSGFLDHIMIEAANLKRLPGFSNSSFNLRAKTVIDESKVVPLIRWLKHNALSYPRIAKIILKSRGKPESIRSFVMWLKSVRVKGEFLGVVMLKAGDDILQRRHEELDEIVQYLESNGVRREWMGYVISRCPQLLSYSLEEVKTRTHFFLDMGLNEKDFGTMVFDFPRVLGYYSLEEMNEKVNYLKEFGLQLEDVGKLLAFRPQLMACSIEEHWKPLVKYLYYYGITRDGMKRMLIIKPMVFCADLEKTIVPKVKFFEDIGVHNEGIGNMLVKFPPLLTYSLYKKIRPVVIFLMTKAGVTEKDIGKVVALGPELLGCNIVHKLDVNVKYFLSLGIRLRQLGEMITDFPLLLRYNPDVLRPKYIYLRKSMIRPLEDVIEFPRFFSYSLEGRIIPRHKVLVENHINIKLRYMLACTDEEFHKMVKDLIGKRRKFESAVTEDISTPQA 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02437 624 SMART mt_12 484 515 IPR003690 GO:0003690|GO:0006355
Viun11g02437 624 SMART mt_12 447 479 IPR003690 GO:0003690|GO:0006355
Viun11g02437 624 SMART mt_12 411 442 IPR003690 GO:0003690|GO:0006355
Viun11g02437 624 SMART mt_12 304 334 IPR003690 GO:0003690|GO:0006355
Viun11g02437 624 SMART mt_12 552 583 IPR003690 GO:0003690|GO:0006355
Viun11g02437 624 SMART mt_12 520 551 IPR003690 GO:0003690|GO:0006355
Viun11g02437 624 SMART mt_12 339 370 IPR003690 GO:0003690|GO:0006355
Viun11g02437 624 SMART mt_12 375 406 IPR003690 GO:0003690|GO:0006355
Viun11g02437 624 PANTHER CGI-12 PROTEIN-RELATED 278 370 IPR003690 GO:0003690|GO:0006355
Viun11g02437 624 FunFam BnaA09g42960D protein 377 608 - -
Viun11g02437 624 Pfam mTERF 234 366 IPR003690 GO:0003690|GO:0006355
Viun11g02437 624 Pfam mTERF 370 597 IPR003690 GO:0003690|GO:0006355
Viun11g02437 624 Coils Coil 146 166 - -
Viun11g02437 624 Gene3D Transcription termination factor 3, mitochondrial 376 604 IPR038538 -
Viun11g02437 624 MobiDBLite consensus disorder prediction 101 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02437 Viun-Chr11 38054388 38057517 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun11g02437 mTERF 2.2e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02437 K15032 - cave:132184212 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02437 11 38054388 38057517 Viun11g02437 11 38054388 38057517 ECH