Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02426 ATGACTGACGCCGGCGAAACCACGAGTGTGAGCTTGAAGCTTCTCGTGTTGGTGGCGGTTTTGGTCGTCTTCGCGGTGGTGATTCTTGTTCTCGTCTTCTTCCTGTGCTTGCGCGGCGGCCGGAGCTGGAAGCGACGGAAGCTGGCGGCGAAGCACAGCTCCGGGAGCATCCCTCTGGTGTCGAAGGAGATCATGGTGGTGAAGACCTCGGATCTCACCCCTGCGACGACGAGCGAGATTGGTGACGTGGAGGGTGATCCGAAGAAGGAGACGGGGATGAAGGTGGAGATTGACGCGGTGTTGAAGAGCGAAGTTTCCGGTGGTGGGGCCCACCGCAGCGAGGTGTCGGTGGAGGATCCGAACATAGGGTGGGGCCGGTGGTACAGCATGAAGGAAGTGGAACTCGCCACGCGCGGTTTCGCAGAAGGGAATGTTATTGGGGAAGGTGGGTACGGTGTTGTGTACAGAGGAATTCTGCACGATGCTTCCGTCGTTGCTGTCAAGAATCTTCTCAACAACAAGGGTCAAGCAGAGAAGGAGTTTAAGGTAGAGGTTGAAGCTATTGGAAAAGTAAGGCATAAGAATTTGGTTCGTTTGGTGGGATATTGCGCAGAAGGTGCTCGAAGGATGCTTGTTTATGAGTATGTTGACAACGGAAACTTAGAACAGTGGCTGCATGGTGATGTAGGATCAGTTAGCCCCTTGACATGGGATATTCGAATGAGAATTGCTATTGGGACAGCAAAAGGGCTAGCCTATTTGCATGAAGGCTTAGAACCCAAAGTTGTGCACCGGGATATAAAATCCAGTAACATTCTGTTGGATAAAAACTGGAATGCCAAAGTATCAGATTTTGGACTTGCCAAACTCTTAGGATCTGAGAAAACACATGTAACTACGCGTGTAATGGGAACATTCGGATATGTTGCACCAGAGTATGCAAGCTCAGGTATGCTTAATGAGCGCAGTGATGTGTATAGCTTTGGAGTTCTACTCATGGAGATAATCACAGGAAGAAGCCCCATTGATTATTCAAGACCACCTGGAGAGATGAATTTAGTAGATTGGTTCAAGGCAATGGTGGCAAGTCGTCGCAGTGAGGAGCTAGTTGATCCTTTGATTGAGATTCCACCCTCTCCAAGATCTTTGAAACGAGTTTTACTAATTTGTCTGCGGTGTATAGACATGGATGTCGTTAAACGACCAAAGATGGGTCAAATTGTTCATATGCTTGAAACAGATGATTTCCCCTTTCGTTCTGAGCTACGCACAGTTAGAGAGAAAGATCCTTTGCCTTCTCATGCAGATGTTTCCATTAAAGTTCCTTATCCACCACCAAAGCATGCAGAAAGCGTAGAAAACTCAAGATGGAGATGA 1377 0.4837 MTDAGETTSVSLKLLVLVAVLVVFAVVILVLVFFLCLRGGRSWKRRKLAAKHSSGSIPLVSKEIMVVKTSDLTPATTSEIGDVEGDPKKETGMKVEIDAVLKSEVSGGGAHRSEVSVEDPNIGWGRWYSMKEVELATRGFAEGNVIGEGGYGVVYRGILHDASVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVRLVGYCAEGARRMLVYEYVDNGNLEQWLHGDVGSVSPLTWDIRMRIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKTHVTTRVMGTFGYVAPEYASSGMLNERSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKAMVASRRSEELVDPLIEIPPSPRSLKRVLLICLRCIDMDVVKRPKMGQIVHMLETDDFPFRSELRTVREKDPLPSHADVSIKVPYPPPKHAESVENSRWR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02426 458 ProSitePatterns Protein kinases ATP-binding region signature. 146 168 IPR017441 GO:0005524
Viun11g02426 458 Pfam Protein tyrosine and serine/threonine kinase 143 411 IPR001245 GO:0004672|GO:0006468
Viun11g02426 458 CDD STKc_IRAK 146 412 - -
Viun11g02426 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Viun11g02426 458 ProSiteProfiles Protein kinase domain profile. 140 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02426 458 MobiDBLite consensus disorder prediction 434 458 - -
Viun11g02426 458 PANTHER OS01G0323000 PROTEIN 7 428 - -
Viun11g02426 458 FunFam Probable serine/threonine-protein kinase At1g01540 120 215 - -
Viun11g02426 458 SMART serkin_6 140 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02426 458 Gene3D Phosphorylase Kinase; domain 1 111 215 - -
Viun11g02426 458 Gene3D Transferase(Phosphotransferase) domain 1 216 423 - -
Viun11g02426 458 FunFam Putative receptor-like serine/threonine-protein kinase 216 426 - -
Viun11g02426 458 SUPERFAMILY Protein kinase-like (PK-like) 118 413 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02426 Viun-Chr11 38020458 38024299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02426 20 414 Trihelix Transcription Factor Family AT1G70460 42.750 1.38e-96 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Viun11g02426 PK_Tyr_Ser-Thr 9.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02426 - - gmx:100305442 770