Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun11g02386 | ATGGAGATGGAAGATTACGCGAGCAGCGACGAGGATTACCATTACGACTCCGATCAAGATGACTCTGTCGAGGCCTACGAAAACGACGAGGATTACGCGTTGCTCTCTTCCAAGGGTCCCACAACTAAGGTGATTACAAAGGAATCACTTTTAGTTGCACAGAAGGAGGATTTGCGCAGAGTAATGGAGATGCTATCGGTAAGAGAGCAACACGCTCGTACACTGCTAATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTATATGTAGACAAGGGGAAAGCATTTCTCTTTGGCGAGGCTGGTGTTACTGTGGATGAACATCCCGACTCTGACTCATCCCTTCCTTCTACAGTAATGTGCTACATCTGCATGGAGGATGTTGCTAGGGTCGAAACAACAAGAATGGATTGTAGCCATTGCTTTTGCAACTCCTGTTGGATTGAGCATTTTATTGTCAAAATAAATGAGGGTCAAAGTAAACGTATTAGATGCATGCAACACAAGTGCAATTCCATATGTGATGAAGCTGTGGTTAGAACTTTACTCAGTAGAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCTTACATTGAAGACAATAAAAGAGTTAAATGGTGTCCCAGTACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAATTGTGTGAGGTAGAATGTTCATGTGGTTTACAGTTTTGTTTTAGGTGCTTGTCAGAAGCACACTCACCTTGTTCATGCCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAGTCAGAAACTGTTAATTGGATAACCGTTCATACAAAACCATGCCCAAAGTGTCACAAACCAGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCATTTTGTTGGTTGTGCGGTGGAGCTACTGGCAGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGTTGTGGTCGCTACAAAGAGCAAGAAAAAACGGCAGAACGTGCAAAGAGGGATCTATATCGGTATATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGATTGAAAGCAAACTGAAAGAAACTATACAAGGGAAGATTGCCATATCAGAAGAAAAAGATTCTACACTCAGAGATTATAGTTGGGTAAATAATGGTCTCTCCAGACTTTTCAGATCTAGGAGAGTCCTATCCTATTCCTATGCTTTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAACTCGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTGTGGAGATAAGAATGCAGATTCTCAACCTATCAACAATTATTGATAAACTTTGTCAAAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTCCATCTTGGCATTCACAGTATCGCACCATACAAGTCAAAGGGCATCGAGAGGGCTTCAGAACTTTCAGTTTGCTGGAACAACAAAGTAAATACTGTTTGA | 1602 | 0.4101 | MEMEDYASSDEDYHYDSDQDDSVEAYENDEDYALLSSKGPTTKVITKESLLVAQKEDLRRVMEMLSVREQHARTLLIYHRWDVEKLFAVYVDKGKAFLFGEAGVTVDEHPDSDSSLPSTVMCYICMEDVARVETTRMDCSHCFCNSCWIEHFIVKINEGQSKRIRCMQHKCNSICDEAVVRTLLSRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFRCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLHLGIHSIAPYKSKGIERASELSVCWNNKVNTV | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun11g02386 | 533 | ProSiteProfiles | Zinc finger RING-type profile. | 122 | 170 | IPR001841 | - | |
| Viun11g02386 | 533 | Gene3D | - | 251 | 498 | - | - | |
| Viun11g02386 | 533 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 49 | 399 | IPR031127 | GO:0004842|GO:0016567 | |
| Viun11g02386 | 533 | ProSiteProfiles | TRIAD supradomain profile. | 118 | 332 | IPR044066 | - | |
| Viun11g02386 | 533 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Viun11g02386 | 533 | FunFam | RBR-type E3 ubiquitin transferase | 117 | 207 | - | - | |
| Viun11g02386 | 533 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 208 | IPR013083 | - | |
| Viun11g02386 | 533 | CDD | Rcat_RBR_ARI1-like | 276 | 329 | - | - | |
| Viun11g02386 | 533 | CDD | RING-HC_RBR_TRIAD1 | 120 | 173 | - | - | |
| Viun11g02386 | 533 | Pfam | Ariadne domain | 332 | 531 | IPR045840 | - | |
| Viun11g02386 | 533 | Pfam | IBR domain, a half RING-finger domain | 193 | 255 | IPR002867 | GO:0008270 | |
| Viun11g02386 | 533 | CDD | BRcat_RBR_ANKIB1 | 200 | 264 | - | - | |
| Viun11g02386 | 533 | SMART | ibrneu5 | 193 | 255 | IPR002867 | GO:0008270 | |
| Viun11g02386 | 533 | SMART | ibrneu5 | 263 | 328 | IPR002867 | GO:0008270 | |
| Viun11g02386 | 533 | SUPERFAMILY | RING/U-box | 193 | 261 | - | - | |
| Viun11g02386 | 533 | SUPERFAMILY | RING/U-box | 263 | 320 | - | - | |
| Viun11g02386 | 533 | FunFam | RBR-type E3 ubiquitin transferase | 251 | 498 | - | - | |
| Viun11g02386 | 533 | SUPERFAMILY | RING/U-box | 118 | 205 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun11g02386 | Viun-Chr11 | 37729664 | 37733501 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun11g02386 | 62 | 529 | ARIADNE family | AT2G16090 | 72.669 | 0.0 | 725 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun11g02386 | K11968 | - | gmx:100783343 | 1017.3 |