Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02368 ATGATGTCTCCTTCTCAGCCACCCCATTGGGCCCCATCTCCGTCTCCGTCTGCATCTCCGACCCCAACGCCGACACCAATACTAAACAAATCATTCCTACCACCGCCGTCCAACACGCCGGCGGTTGACTTCAGCCCTCCCTTGATAGCAATGGTCGTAGTCGTCGCCGCCGCCTTTCTCGTCGTAACCTACTCTCGTCTCATCGCGCGACACCTCAGGCCGCCTATCCACCGCCTCCTACACCGCTTCCGGCGGCGGCGATTCCCCCCGTCCTCCGTTGGCGACCTCGAGTCCTTACCCTACGAGTCTCCCTTTGACGGCCCGCGCGTGTTCTCTCCCTACGGCTTAGACGAAACGGTGATTAAAACGATACCGTTTTCGCTTTACACAGCTAAATACGACGCTCGTTTCGAAGAGTCTCGCAACGACTGCGCCGTTTGCTTGCTGGAATTCGAAGACGAAGACTACGTGAGAACGCTTCCGGTTTGTTCACACACGTTCCACGTGGACTGCATCGACGCGTGGCTTCGCTCGCACGCTAACTGCCCTCTCTGCCGCGCAGGAGTCCTCTGCGCCGATTCGCCTTTCACTCCGATGATGGCCGCAAGAATCCGACCGAGCCTCGACGACGACACAATTCTTCACCGCATCAGCCTGGACCCTCTCATCGATCCCCCACCGCCCGTGGCAATATCCGCCGTCCCGGAGATAACACCCTGCATCGACGAGCAATCTCCGAGGAGGAACCACAACCACGCGAACGTCAGCTCAGAGGATTGTTTTAGGGATTTTCTGCTGAAGAGATCATATTCGTTTGGGTTTGAACGGAGTGTCGCGTCGGAGAGGATGGTGATGGAAGCCACCACTGCCTCGCCGTGGCGATACCGCAGAGGGAGTAATAGTTTCTGGAGCAAGAGGCCTTCACCGTTTGGGTCTTTGGGGAAACCAAGGGTGTTTTCATTTCGGTATTACAGAGGGATGAAATCACCGTTCTTCCGGCGGAGGGGATTCTTCCCGCTGTCGGAGTCCAGCGTGAGGTACGGCGGCGGCGGGAGCTCGTCGCGGCGCAGCAAGTCGATTGCAAGCCCAATGTTTCTTCGGTCGTCGGGTCTGGCAGCGGCGGCGTTCTCGTCGAGCCGGCTGAGATGCGGGGATCCCGAGGCGCTTCTGTCGCCGGAGAGATTTAACCGGAGGTGA 1197 0.5856 MMSPSQPPHWAPSPSPSASPTPTPTPILNKSFLPPPSNTPAVDFSPPLIAMVVVVAAAFLVVTYSRLIARHLRPPIHRLLHRFRRRRFPPSSVGDLESLPYESPFDGPRVFSPYGLDETVIKTIPFSLYTAKYDARFEESRNDCAVCLLEFEDEDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCADSPFTPMMAARIRPSLDDDTILHRISLDPLIDPPPPVAISAVPEITPCIDEQSPRRNHNHANVSSEDCFRDFLLKRSYSFGFERSVASERMVMEATTASPWRYRRGSNSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGGGGSSSRRSKSIASPMFLRSSGLAAAAFSSSRLRCGDPEALLSPERFNRR 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02368 398 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Viun11g02368 398 Pfam Ring finger domain 142 186 IPR001841 -
Viun11g02368 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 190 IPR013083 -
Viun11g02368 398 MobiDBLite consensus disorder prediction 1 32 - -
Viun11g02368 398 CDD RING-H2_EL5-like 143 186 - -
Viun11g02368 398 SUPERFAMILY RING/U-box 128 191 - -
Viun11g02368 398 FunFam RING-H2 finger protein ATL65 109 190 - -
Viun11g02368 398 SMART ring_2 144 185 IPR001841 -
Viun11g02368 398 PANTHER RING-H2 FINGER PROTEIN ATL16 32 210 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02368 Viun-Chr11 37676864 37680058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02368 37 398 C3H Transcription Factor Family AT3G18930 51.128 3.67e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02368 - K19041 gmx:100806115 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02368 11 37676864 37680058 Viun11g02368 11 37676864 37680058 ECH