Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02353 ATGACTGGTGCAGAGAAGCACCCAGACTTCTTCAAAGTCTTCCTTCAAGAGCAACACTCTGAAAGAATGCTTATTCCAAATGCTTTTGTGAAGCTGGAAGGGTTACAGGGAAGGATCCCTGAGGATGTCCTCCTCAGGAATCGTAGTGAGAGAGTGTGGCATGTTAAAACACGGTTTTTTGGAGATAGATTATATTTCGATGAAGGGTGGAAGATTTTCCATGCAGAAAACTGCTTAGGAAATGCAGATTTTCTGGTATTTAGATATGATGGGGTTAATGAGTTCAGGGTCACAATCCTTGAAAAATCAACACAGTGTGAGAAAACTCTGGTAAAGATGGAGGAGGAGGAGGAGGAGGGGAATGAAGAAGAGAGAGCAGCGAGACAAGAAGTTGAAGAGACAGTGATAACACCGGAGGAACAAGCTGAGGACCGTGACACAGAGGACGAGGAAGAAGACAGCCAAGATCAGGAATACGATGATGACGACAATGACGATAGTGATTTTGATGAGAACACAGAGATGGAGGAACAGAGTGAAGAAGAAATCATCGTTGGTTCTGTTGGATACACCAGTCAAAGTTATCGCAAAGCTTGCAGAAAGGACACTGCAACAAGTTCCTACCCCCAGACTGAAGACCCTTTCAAAGAAGATGAATTTGATCCAGAAACGTGCATTCAGCCAGAGAATAATTTTTTTGAAGCAAAACTCTACAGAAGTAGACCCAACGAATTGCATATTCCAGGAATCGCCATTCAAGATTTTTCCCTCAGTTTTCCTGAAAAGATTACCCTTAAATGTTGCCAACACTGCCGGCGTAAGGATATTCAAAGAAGCAAATTGCAAGACTATCATCTCAACTTGGCACAACAGGCACCCATCAGAAAAAGATACTTAGAAGTGACGGGAAAAGTGTGTAGGTGGCAGGATGATAGAATATGTATCAAGGGTTGGGCAAATTTTAGTAGAAGGAACAAGATAAAAAACAATGATGTATGCATCTGTGAAGTTATATCAGGGGACGACCAAGTAGTAAGAACATTTCTGGTGCACGTTATAGGTACTAGGAGGGAATAA 1077 0.4215 MTGAEKHPDFFKVFLQEQHSERMLIPNAFVKLEGLQGRIPEDVLLRNRSERVWHVKTRFFGDRLYFDEGWKIFHAENCLGNADFLVFRYDGVNEFRVTILEKSTQCEKTLVKMEEEEEEGNEEERAARQEVEETVITPEEQAEDRDTEDEEEDSQDQEYDDDDNDDSDFDENTEMEEQSEEEIIVGSVGYTSQSYRKACRKDTATSSYPQTEDPFKEDEFDPETCIQPENNFFEAKLYRSRPNELHIPGIAIQDFSLSFPEKITLKCCQHCRRKDIQRSKLQDYHLNLAQQAPIRKRYLEVTGKVCRWQDDRICIKGWANFSRRNKIKNNDVCICEVISGDDQVVRTFLVHVIGTRRE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02353 358 MobiDBLite consensus disorder prediction 200 220 - -
Viun11g02353 358 Coils Coil 106 134 - -
Viun11g02353 358 MobiDBLite consensus disorder prediction 111 185 - -
Viun11g02353 358 SUPERFAMILY DNA-binding pseudobarrel domain 302 354 IPR015300 -
Viun11g02353 358 Gene3D - 216 355 IPR015300 -
Viun11g02353 358 SMART B3_2 10 103 IPR003340 GO:0003677
Viun11g02353 358 MobiDBLite consensus disorder prediction 142 181 - -
Viun11g02353 358 PANTHER B3 DOMAIN-CONTAINING 5 341 - -
Viun11g02353 358 Gene3D - 2 106 IPR015300 -
Viun11g02353 358 CDD B3_DNA 8 100 IPR003340 GO:0003677
Viun11g02353 358 Pfam B3 DNA binding domain 10 102 IPR003340 GO:0003677
Viun11g02353 358 SUPERFAMILY DNA-binding pseudobarrel domain 6 103 IPR015300 -
Viun11g02353 358 MobiDBLite consensus disorder prediction 124 141 - -
Viun11g02353 358 ProSiteProfiles B3 DNA-binding domain profile. 8 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02353 Viun-Chr11 37584228 37588276 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02353 1 352 B3 DNA Binding Superfamily AT3G06160 23.611 3.82e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun11g02353 B3 1.9e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02353 - - var:108340234 576.63