Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02350 ATGAGGAAATATGGAGGTGAACTTTCTCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGGTTGAAAAAGGTAGACAACAAGTATTGGTTCCGTGACGGTTGGCAAGAGTTTATTCAGCACTATTCCATTGGCGTAGGATACTTGTTGGTTTTCAGATACGAAGGAAAGTCATGTTTCAATGTTCATGTTTTTAATTTGGCTACTTCTGAGATAAACTATCAATCAGCCATACGATGCAGTAATGAAGGGCCTCACTTTGCAAATCTTAAGTTTTTTGAGGAAATGGATGATGAAGATTCCATTGAAATCTTGGATTCACAACCTTCCCATCTTGCTCCAAGTTCATTGCAAAATAGAGTTCTGGCTGGTTCAGTAGATAAAATGTTGCCTGCAAAGAGTTATACACCTCCAGCATTACAGAATCTGTTCAATGGATCTAAACTCAACAGCATAAACTGGGGAGAGGGTGGTGATACGCATTGTTCCAAAAGTGCCAATTCACTGGATAATCGATTCACCAGAGACATAGGAGTTCAATTTAACGCGGTGGAGTTTAAAAAATCTACTGAGGAATTGAAACTACGTGCTTCCATGGAGGAAAGGATGAAGAAAACTGCAAGAAAGAAGCGGAAAACAGATGGACATGAAGCCTCTGCAGAGCAAGAAGAGGAAGTTGAAATGCGCTTCAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAGAGGGCCATCAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGTAGGGTTGTCCTAAGGCCCTCCTACCTATACAGGGGATGCATAATGTATCTGCCATCATGTTTTGCAGAAAAACATTTGAATGGAGTTTCTGGGTTTATTAAACTTCAGATTTCTAATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGGGTAGGTAGAGCCAAGTTAAGCCAGGGTTGGTTTGAGTTTTCATTAGAGAACAATTTAGGAGAAGGTGATGTGTGTGTGTTTGAGCTTCTTAGAGTGAAAGAAGTAGTGCTGCAAGTTACCATCTTTCGCATTACTGAGGAAGTTGCATTGTTGAACCCTCCTCCTTTGCAGCAGAACCAAAACCTGAGCTCAGTTAAACTGCTGAACACTCCCTTGCAGCAACACCTTAGTTCAACTAAAATGGTTAGAAATTAG 1212 0.4117 MRKYGGELSPIVTLSVPDGSVWRVGLKKVDNKYWFRDGWQEFIQHYSIGVGYLLVFRYEGKSCFNVHVFNLATSEINYQSAIRCSNEGPHFANLKFFEEMDDEDSIEILDSQPSHLAPSSLQNRVLAGSVDKMLPAKSYTPPALQNLFNGSKLNSINWGEGGDTHCSKSANSLDNRFTRDIGVQFNAVEFKKSTEELKLRASMEERMKKTARKKRKTDGHEASAEQEEEVEMRFRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRVGRAKLSQGWFEFSLENNLGEGDVCVFELLRVKEVVLQVTIFRITEEVALLNPPPLQQNQNLSSVKLLNTPLQQHLSSTKMVRN 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02350 403 SUPERFAMILY DNA-binding pseudobarrel domain 262 363 IPR015300 -
Viun11g02350 403 Pfam B3 DNA binding domain 4 69 IPR003340 GO:0003677
Viun11g02350 403 Pfam B3 DNA binding domain 272 362 IPR003340 GO:0003677
Viun11g02350 403 SMART B3_2 1 72 IPR003340 GO:0003677
Viun11g02350 403 SMART B3_2 269 364 IPR003340 GO:0003677
Viun11g02350 403 ProSiteProfiles B3 DNA-binding domain profile. 269 364 IPR003340 GO:0003677
Viun11g02350 403 CDD B3_DNA 267 362 IPR003340 GO:0003677
Viun11g02350 403 Gene3D - 246 366 IPR015300 -
Viun11g02350 403 SUPERFAMILY DNA-binding pseudobarrel domain 2 70 IPR015300 -
Viun11g02350 403 PANTHER B3 DOMAIN-CONTAINING 2 353 - -
Viun11g02350 403 Gene3D - 1 72 IPR015300 -
Viun11g02350 403 CDD B3_DNA 1 70 IPR003340 GO:0003677
Viun11g02350 403 ProSiteProfiles B3 DNA-binding domain profile. 1 72 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02350 Viun-Chr11 37580130 37582649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02350 1 365 B3 DNA Binding Superfamily AT3G18990 51.902 2.40e-122 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun11g02350 B3 8.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02350 - - var:108340232 740.725