Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02346 ATGTCTTTTTTCAACAGTGATCTCACTAGGTTGAAAAAGGTAGACAACAAGTATTGGTTCCGTGACGGTTGGCAAGAGTTTATTCAGCACTATTCCATTGGCGTAGGATACTTGTTGGTTTTCAGATACGAAGGAAAGTCATGTTTCAATGTTCATGTTTTTAATTTGGCTACTTCTGAGATAAACTATCAATCAGCCATACGATGCAGTAATGAAGGGCCTCACTTTGCAAATCTTAAGTTTTTTGAGGAAATGGATGATGAAGATTCCATTGAAATCTTGGATTCACAACCTTCCCATCTTGCTCCAAGTTCATTGCAAAATAGAGTTCTGGCTGGTTCAGTAGATAAAATGTTGCCTGCAAAGAGTTATACACCTCCAGCATTACAGAATCTGTTCAATGGATCTAAACTCAACAGCATAAACTGGGGAGAGGGTGGTGATACGCATTGTTCCAAAAGTGCCAATTCACTGGATAATCGATTCACCAGAGACATAGGAGTTCAATTTAACGCGGTGGAGTTTAAAAAATCTACTGAGGAATTGAAACTACGTGCTTCCATGGAGGAAAGGATGAAGAAAACTGCAAGAAAGAAGCGGAAAACAGATGGACATGAAGCCTCTGCAGAGCAAGAAGAGGAAGTTGAAATGCGCTTCAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAGAGGGCCATCAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGTAGGGTTGTCCTAAGGCCCTCCTACCTATACAGGGGATGCATAATGTATCTGCCATCATGTTTTGCAGAAAAACATTTGAATGGAGTTTCTGGGTTTATTAAACTTCAGATTTCTAATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGGGTAGGTAGAGCCAAGTTAAGCCAGGGTTGGTTTGAGTTTTCATTAGAGAACAATTTAGGAGAAGGTGATGTGTGTGTGTTTGAGCTTCTTAGAGTGAAAGAAGTAGTGCTGCAAGTTACCATCTTTCGCATTACTGAGGAAGTTGCATTGTTGAACCCTCCTCCTTTGCAGCAGAACCAAAACCTGAGCTCAGTTAAACTGCTGAACACTCCCTTGCAGCAACACCTTAGTTCAACTAAAATGGTTAGAAATTAG 1167 0.407 MSFFNSDLTRLKKVDNKYWFRDGWQEFIQHYSIGVGYLLVFRYEGKSCFNVHVFNLATSEINYQSAIRCSNEGPHFANLKFFEEMDDEDSIEILDSQPSHLAPSSLQNRVLAGSVDKMLPAKSYTPPALQNLFNGSKLNSINWGEGGDTHCSKSANSLDNRFTRDIGVQFNAVEFKKSTEELKLRASMEERMKKTARKKRKTDGHEASAEQEEEVEMRFRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRVGRAKLSQGWFEFSLENNLGEGDVCVFELLRVKEVVLQVTIFRITEEVALLNPPPLQQNQNLSSVKLLNTPLQQHLSSTKMVRN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02346 388 ProSiteProfiles B3 DNA-binding domain profile. 1 57 IPR003340 GO:0003677
Viun11g02346 388 Pfam B3 DNA binding domain 257 347 IPR003340 GO:0003677
Viun11g02346 388 PANTHER B3 DOMAIN-CONTAINING 11 338 - -
Viun11g02346 388 SMART B3_2 254 349 IPR003340 GO:0003677
Viun11g02346 388 ProSiteProfiles B3 DNA-binding domain profile. 254 349 IPR003340 GO:0003677
Viun11g02346 388 CDD B3_DNA 252 347 IPR003340 GO:0003677
Viun11g02346 388 CDD B3_DNA 10 55 IPR003340 GO:0003677
Viun11g02346 388 SUPERFAMILY DNA-binding pseudobarrel domain 247 348 IPR015300 -
Viun11g02346 388 Gene3D - 231 351 IPR015300 -
Viun11g02346 388 Gene3D - 6 57 IPR015300 -
Viun11g02346 388 SUPERFAMILY DNA-binding pseudobarrel domain 9 55 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02346 Viun-Chr11 37579373 37582649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02346 11 350 B3 DNA Binding Superfamily AT3G18990 51.312 5.59e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun11g02346 B3 7.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02346 - - var:108340232 689.878