Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02345 ATGACGCACCCTTCTTTCCACAAGCTTCTTCTACCCTCCACTCTCCAACCCAAACAACTGAGGCTTCCAGATGATTTTATGAGGAAATATGGAGGTGAACTTTCTCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGGTTGAAAAAGGTAGACAACAAGTATTGGTTCCGTGACGGTTGGCAAGAGTTTATTCAGCACTATTCCATTGGCGTAGGATACTTGTTGGTTTTCAGATACGAAGGAAAGTCATGTTTCAATGTTCATGTTTTTAATTTGGCTACTTCTGAGATAAACTATCAATCAGCCATACGATGCAGTAATGAAGGGCCTCACTTTGCAAATCTTAAGTTTTTTGAGGAAATGGATGATGAAGATTCCATTGAAATCTTGGATTCACAACCTTCCCATCTTGCTCCAAGTTCATTGCAAAATAGAGTTCTGGCTGGTTCAGTAGATAAAATGTTGCCTGCAAAGAGTTATACACCTCCAGCATTACAGAATCTGTTCAATGGATCTAAACTCAACAGCATAAACTGGGGAGAGGGTGGTGATACGCATTGTTCCAAAAGTGCCAATTCACTGGATAATCGATTCACCAGAGACATAGGAGTTCAATTTAACGCGGTGGAGTTTAAAAAATCTACTGAGGAATTGAAACTACGTGCTTCCATGGAGGAAAGGATGAAGAAAACTGCAAGAAAGAAGCGGAAAACAGATGGACATGAAGCCTCTGCAGAGCAAGAAGAGGAAGTTGAAATGCGCTTCAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAGAGGGCCATCAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGTAGGGTTGTCCTAAGGCCCTCCTACCTATACAGGGGATGCATAATGTATCTGCCATCATGTTTTGCAGAAAAACATTTGAATGGAGTTTCTGGGTTTATTAAACTTCAGATTTCTAATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGGGTAGGTAGAGCCAAGTTAAGCCAGGGTTGGTTTGAGTTTTCATTAGAGAACAATTTAGGAGAAGGTGATGTGTGTGTGTTTGAGCTTCTTAGAGTGAAAGAAGTAGTGCTGCAAGTTACCATCTTTCGCATTACTGAGGAAGTTGCATTGTTGAACCCTCCTCCTTTGCAGCAGAACCAAAACCTGAGCTCAGTTAAACTGCTGAACACTCCCTTGCAGCAACACCTTAGTTCAACTAAAATGGTTAGAAATTAG 1290 0.4155 MTHPSFHKLLLPSTLQPKQLRLPDDFMRKYGGELSPIVTLSVPDGSVWRVGLKKVDNKYWFRDGWQEFIQHYSIGVGYLLVFRYEGKSCFNVHVFNLATSEINYQSAIRCSNEGPHFANLKFFEEMDDEDSIEILDSQPSHLAPSSLQNRVLAGSVDKMLPAKSYTPPALQNLFNGSKLNSINWGEGGDTHCSKSANSLDNRFTRDIGVQFNAVEFKKSTEELKLRASMEERMKKTARKKRKTDGHEASAEQEEEVEMRFRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRVGRAKLSQGWFEFSLENNLGEGDVCVFELLRVKEVVLQVTIFRITEEVALLNPPPLQQNQNLSSVKLLNTPLQQHLSSTKMVRN 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02345 429 CDD B3_DNA 4 96 IPR003340 GO:0003677
Viun11g02345 429 SUPERFAMILY DNA-binding pseudobarrel domain 288 389 IPR015300 -
Viun11g02345 429 CDD B3_DNA 293 388 IPR003340 GO:0003677
Viun11g02345 429 Gene3D - 272 392 IPR015300 -
Viun11g02345 429 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Viun11g02345 429 PANTHER B3 DOMAIN-CONTAINING 3 379 - -
Viun11g02345 429 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Viun11g02345 429 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Viun11g02345 429 Pfam B3 DNA binding domain 298 388 IPR003340 GO:0003677
Viun11g02345 429 ProSiteProfiles B3 DNA-binding domain profile. 295 390 IPR003340 GO:0003677
Viun11g02345 429 SMART B3_2 6 98 IPR003340 GO:0003677
Viun11g02345 429 SMART B3_2 295 390 IPR003340 GO:0003677
Viun11g02345 429 Gene3D - 1 98 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02345 Viun-Chr11 37579195 37582649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02345 1 391 B3 DNA Binding Superfamily AT3G18990 52.284 2.46e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun11g02345 B3 9.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02345 - - var:108340232 770.385