Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02341 ATGAAAGGTGGTGCCAAAAAATATCCTCATTTCTTCAGAATCTTCTTCCCAGAGCAACACTCTCACACTATGAAAGTTCCAAAGGAGTTTCTGAAGAATTTGAATGAAGAGTTGTTGAGTAATGCAGTTCTGAGTATCCCTTCTTCTGATGAGAAGTGGGAAGTAAGTGTTGTAAAGAAAGGAAGTGAAGTGTATATGCAAAATGGTTGGCCACAGTTTGTGACAGATAACTCATTGGTGCTTCATGAGCTCTTGCTTTTTGAATATCATGGAGATAACTGTTTCCATGTTCAAATTTTTGGCACCAATGGATTGGAGAGGTTATGCGTCAAAGAAACAACACAAGAACAACCTACGACCATACCTAAGAAGACTATTCCAACTTCTGCTGGTTCATCCCTCCATAAATCAAAGTCTTGTAAAAAAGACTTGTCTCAGCCGAAGGAATCCCCAATTGAAATTGAAAGTTCGGAAGCATTGAAATTGGCCGAGTCCTTTACCTCTTGCAAACCTCATTGGAAGCACGTCATGACAAAATGCCATGTGGAAGGTCGTTGCATATTGCCTATTGCTAGTAAGTTTGCGAGAAAGTATATTCCTGAAGAAGTGAAACAGATCCATATGGGAAATTCCGAAGGAACACTCTGGAAAGTTCAAGTGAGTTATTTTAAAATTCAAAGTAGAAGTTATGCTAACTTATCTACAGGATGGGCAAAATTCGTTCGTGATAACAAGCTCATGAGAGGCGACACTTGCATATTTGAACTTGAAGAAAACAAAGACCTCCATATGAAGGTTCACATATTCAGAACCAGATGTGCACCAAGTTAA 831 0.3899 MKGGAKKYPHFFRIFFPEQHSHTMKVPKEFLKNLNEELLSNAVLSIPSSDEKWEVSVVKKGSEVYMQNGWPQFVTDNSLVLHELLLFEYHGDNCFHVQIFGTNGLERLCVKETTQEQPTTIPKKTIPTSAGSSLHKSKSCKKDLSQPKESPIEIESSEALKLAESFTSCKPHWKHVMTKCHVEGRCILPIASKFARKYIPEEVKQIHMGNSEGTLWKVQVSYFKIQSRSYANLSTGWAKFVRDNKLMRGDTCIFELEENKDLHMKVHIFRTRCAPS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02341 276 SUPERFAMILY DNA-binding pseudobarrel domain 7 104 IPR015300 -
Viun11g02341 276 SUPERFAMILY DNA-binding pseudobarrel domain 170 270 IPR015300 -
Viun11g02341 276 Gene3D - 4 104 IPR015300 -
Viun11g02341 276 ProSiteProfiles B3 DNA-binding domain profile. 24 103 IPR003340 GO:0003677
Viun11g02341 276 CDD B3_DNA 9 100 IPR003340 GO:0003677
Viun11g02341 276 ProSiteProfiles B3 DNA-binding domain profile. 173 272 IPR003340 GO:0003677
Viun11g02341 276 Pfam B3 DNA binding domain 175 271 IPR003340 GO:0003677
Viun11g02341 276 Pfam B3 DNA binding domain 20 101 IPR003340 GO:0003677
Viun11g02341 276 MobiDBLite consensus disorder prediction 113 135 - -
Viun11g02341 276 CDD B3_DNA 176 270 IPR003340 GO:0003677
Viun11g02341 276 MobiDBLite consensus disorder prediction 113 152 - -
Viun11g02341 276 Gene3D - 152 272 IPR015300 -
Viun11g02341 276 PANTHER B3 DOMAIN-CONTAINING 5 267 - -
Viun11g02341 276 SMART B3_2 11 103 IPR003340 GO:0003677
Viun11g02341 276 SMART B3_2 173 272 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02341 Viun-Chr11 37572768 37576541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02341 9 271 B3 DNA Binding Superfamily AT3G18990 22.941 4.52e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun11g02341 B3 6.2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02341 - - vun:114168435 539.265