Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02340 ATGACAATGAGAGACTTTTCATTTTATCAAAAAGCTTTAATCGTACAAGGAAATAACAGGGAGATGTGGCAGATGGATTATTATCGGGGCAATCCAGTGTTCTTCGTTATCATCAACAACACCAAATTACAGAAAGTTCCAGAGGGGTTTCTGAAGCATTTGAATGAAGACTTTCAAAATGCAGTTTTTATTGGTCCTTCTGGTGATAATTGGCAAGTAACTATTCTGAAGAAAGGAAATAACATTTATATGCACAATGGTTGGCCACAGTTTCTCACAGACAACTCAGTGATGCTTGATGATTTCTTGCTTTTTACATATCATGGAGGGAACTGCTTCCATGTTCAGATTTTTGGTAAGAATGGATTGGAGAGACTAGGTTTCAAACAGAGAAGACAAGACCAGGTTCTGATCCCAAGTTTGGTGAGGACAAAGAAGAACACACACAGAAGAACTTTTTCCAGTTCATTCCTCCACCAAGCCAAGTCTTATAGAAAAGGTCTGTCTTTCGGCAACAGCAGAAGATTCTCATTTTCTAAGAACTTTCCAAAGCTCAAGAGTTCAGTTAAAATTGAGAGTTCAGAAGCATGCTACTTAGCAGATTCTTTTACCTCTCGCAATCCTCACTGGAAACACCTCATGACTAAATGCAATGTAGAAGATCACTGCACATTGCCAATTGCTACTGAGTTTGCCAGGAAGCATATTCCTGAGACAGTGAAACAGATAATTCTTTGGAACACAGAAGGAAAATTTTGGGAGGTGGTAGTGACTTGGTTTGGATGTCAAAATAAGAGGTATACTCGATTTACAACAGGATGGGGAAGATTCGTTCGTGATAACAGACTTATGAGGGGTGACACTTGCATATTTGAACTTGAAGATCAAAACCATTTGAGTGTTCACATATTCAGAACAGGATTTTATTCCCCAAAATTGTTTTAA 945 0.3831 MTMRDFSFYQKALIVQGNNREMWQMDYYRGNPVFFVIINNTKLQKVPEGFLKHLNEDFQNAVFIGPSGDNWQVTILKKGNNIYMHNGWPQFLTDNSVMLDDFLLFTYHGGNCFHVQIFGKNGLERLGFKQRRQDQVLIPSLVRTKKNTHRRTFSSSFLHQAKSYRKGLSFGNSRRFSFSKNFPKLKSSVKIESSEACYLADSFTSRNPHWKHLMTKCNVEDHCTLPIATEFARKHIPETVKQIILWNTEGKFWEVVVTWFGCQNKRYTRFTTGWGRFVRDNRLMRGDTCIFELEDQNHLSVHIFRTGFYSPKLF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02340 314 CDD B3_DNA 46 118 IPR003340 GO:0003677
Viun11g02340 314 SUPERFAMILY DNA-binding pseudobarrel domain 29 122 IPR015300 -
Viun11g02340 314 Pfam B3 DNA binding domain 213 306 IPR003340 GO:0003677
Viun11g02340 314 Pfam B3 DNA binding domain 45 120 IPR003340 GO:0003677
Viun11g02340 314 Gene3D - 188 307 IPR015300 -
Viun11g02340 314 Gene3D - 27 122 IPR015300 -
Viun11g02340 314 ProSiteProfiles B3 DNA-binding domain profile. 210 307 IPR003340 GO:0003677
Viun11g02340 314 SMART B3_2 210 307 IPR003340 GO:0003677
Viun11g02340 314 SMART B3_2 34 121 IPR003340 GO:0003677
Viun11g02340 314 SUPERFAMILY DNA-binding pseudobarrel domain 205 307 IPR015300 -
Viun11g02340 314 ProSiteProfiles B3 DNA-binding domain profile. 46 121 IPR003340 GO:0003677
Viun11g02340 314 PANTHER B3 DOMAIN-CONTAINING 31 303 - -
Viun11g02340 314 CDD B3_DNA 214 305 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02340 Viun-Chr11 37570457 37572176 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02340 31 303 B3 DNA Binding Superfamily AT5G18090 25.085 4.52e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun11g02340 B3 1.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02340 - - vum:124823151 611.683