Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02339 ATGTGGCAGATGGATTATTATCGGGGCAATCCAGTGTTCTTCGTTATCATCAACAACACCAAATTACAGAAAGTTCCAGAGGGGTTTCTGAAGCATTTGAATGAAGACTTTCAAAATGCAGTTTTTATTGGTCCTTCTGGTGATAATTGGCAAGTAACTATTCTGAAGAAAGGAAATAACATTTATATGCACAATGGTTGGCCACAGTTTCTCACAGACAACTCAGTGATGCTTGATGATTTCTTGCTTTTTACATATCATGGAGGGAACTGCTTCCATGTTCAGATTTTTGGTAAGAATGGATTGGAGAGACTAGGTTTCAAACAGAGAAGACAAGACCAGGTTCTGATCCCAAGTTTGGTGAGGACAAAGAAGAACACACACAGAAGAACTTTTTCCAGTTCATTCCTCCACCAAGCCAAGTCTTATAGAAAAGGTCTGTCTTTCGGCAACAGCAGAAGATTCTCATTTTCTAAGAACTTTCCAAAGCTCAAGAGTTCAGTTAAAATTGAGAGTTCAGAAGCATGCTACTTAGCAGATTCTTTTACCTCTCGCAATCCTCACTGGAAACACCTCATGACTAAATGCAATGTAGAAGATCACTGCACATTGCCAATTGCTACTGAGTTTGCCAGGAAGCATATTCCTGAGACAGTGAAACAGATAATTCTTTGGAACACAGAAGGAAAATTTTGGGAGGTGGTAGTGACTTGGTTTGGATGTCAAAATAAGAGGTATACTCGATTTACAACAGGATGGGGAAGATTCGTTCGTGATAACAGACTTATGAGGGGTGACACTTGCATATTTGAACTTGAAGATCAAAACCATTTGAGTGTTCACATATTCAGAACAGGATTTTATTCCCCAAAATTGTTTTAA 882 0.3878 MWQMDYYRGNPVFFVIINNTKLQKVPEGFLKHLNEDFQNAVFIGPSGDNWQVTILKKGNNIYMHNGWPQFLTDNSVMLDDFLLFTYHGGNCFHVQIFGKNGLERLGFKQRRQDQVLIPSLVRTKKNTHRRTFSSSFLHQAKSYRKGLSFGNSRRFSFSKNFPKLKSSVKIESSEACYLADSFTSRNPHWKHLMTKCNVEDHCTLPIATEFARKHIPETVKQIILWNTEGKFWEVVVTWFGCQNKRYTRFTTGWGRFVRDNRLMRGDTCIFELEDQNHLSVHIFRTGFYSPKLF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02339 293 ProSiteProfiles B3 DNA-binding domain profile. 189 286 IPR003340 GO:0003677
Viun11g02339 293 CDD B3_DNA 193 284 IPR003340 GO:0003677
Viun11g02339 293 ProSiteProfiles B3 DNA-binding domain profile. 25 100 IPR003340 GO:0003677
Viun11g02339 293 CDD B3_DNA 25 97 IPR003340 GO:0003677
Viun11g02339 293 SUPERFAMILY DNA-binding pseudobarrel domain 184 286 IPR015300 -
Viun11g02339 293 SUPERFAMILY DNA-binding pseudobarrel domain 9 101 IPR015300 -
Viun11g02339 293 Gene3D - 167 286 IPR015300 -
Viun11g02339 293 SMART B3_2 189 286 IPR003340 GO:0003677
Viun11g02339 293 SMART B3_2 13 100 IPR003340 GO:0003677
Viun11g02339 293 PANTHER B3 DOMAIN-CONTAINING 10 282 - -
Viun11g02339 293 Gene3D - 7 101 IPR015300 -
Viun11g02339 293 Pfam B3 DNA binding domain 192 285 IPR003340 GO:0003677
Viun11g02339 293 Pfam B3 DNA binding domain 24 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02339 Viun-Chr11 37570425 37572176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02339 10 282 B3 DNA Binding Superfamily AT5G18090 25.763 2.93e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun11g02339 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02339 - - vum:124823151 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02339 11 37570425 37572176 Viun11g02339 11 37570425 37572176 ECH