Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02338 ATGGAGATGTGGCAGATGGATTATTATCGGGGCAATCCAGTGTTCTTCGTTATCATCAACAACACCAAATTACAGAAAGTTCCAGAGGGGTTTCTGAAGCATTTGAATGAAGACTTTCAAAATGCAGTTTTTATTGGTCCTTCTGGTGATAATTGGCAAGTAACTATTCTGAAGAAAGGAAATAACATTTATATGCACAATGGTTGGCCACAGTTTCTCACAGACAACTCAGTGATGCTTGATGATTTCTTGCTTTTTACATATCATGGAGGGAACTGCTTCCATGTTCAGATTTTTGGTAAGAATGGATTGGAGAGACTAGGTTTCAAACAGAGAAGACAAGACCAGGTTCTGATCCCAAGTTTGGTGAGGACAAAGAAGAACACACACAGAAGAACTTTTTCCAGTTCATTCCTCCACCAAGCCAAGTCTTATAGAAAAGGTCTGTCTTTCGGCAACAGCAGAAGATTCTCATTTTCTAAGAACTTTCCAAAGCTCAAGAGTTCAGTTAAAATTGAGAGTTCAGAAGCATGCTACTTAGCAGATTCTTTTACCTCTCGCAATCCTCACTGGAAACACCTCATGACTAAATGCAATGTAGAAGATCACTGCACATTGCCAATTGCTACTGAGTTTGCCAGGAAGCATATTCCTGAGACAGTGAAACAGATAATTCTTTGGAACACAGAAGGAAAATTTTGGGAGGTGGTAGTGACTTGGTTTGGATGTCAAAATAAGAGGTATACTCGATTTACAACAGGATGGGGAAGATTCGTTCGTGATAACAGACTTATGAGGGGTGACACTTGCATATTTGAACTTGAAGATCAAAACCATTTGAGTGTTCACATATTCAGAACAGGATTTTATTCCCCAAAATTGTTTTAA 888 0.3885 MEMWQMDYYRGNPVFFVIINNTKLQKVPEGFLKHLNEDFQNAVFIGPSGDNWQVTILKKGNNIYMHNGWPQFLTDNSVMLDDFLLFTYHGGNCFHVQIFGKNGLERLGFKQRRQDQVLIPSLVRTKKNTHRRTFSSSFLHQAKSYRKGLSFGNSRRFSFSKNFPKLKSSVKIESSEACYLADSFTSRNPHWKHLMTKCNVEDHCTLPIATEFARKHIPETVKQIILWNTEGKFWEVVVTWFGCQNKRYTRFTTGWGRFVRDNRLMRGDTCIFELEDQNHLSVHIFRTGFYSPKLF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02338 295 Gene3D - 9 103 IPR015300 -
Viun11g02338 295 SMART B3_2 191 288 IPR003340 GO:0003677
Viun11g02338 295 SMART B3_2 15 102 IPR003340 GO:0003677
Viun11g02338 295 CDD B3_DNA 195 286 IPR003340 GO:0003677
Viun11g02338 295 CDD B3_DNA 27 99 IPR003340 GO:0003677
Viun11g02338 295 PANTHER B3 DOMAIN-CONTAINING 12 284 - -
Viun11g02338 295 SUPERFAMILY DNA-binding pseudobarrel domain 186 288 IPR015300 -
Viun11g02338 295 SUPERFAMILY DNA-binding pseudobarrel domain 11 103 IPR015300 -
Viun11g02338 295 Gene3D - 169 288 IPR015300 -
Viun11g02338 295 ProSiteProfiles B3 DNA-binding domain profile. 27 102 IPR003340 GO:0003677
Viun11g02338 295 ProSiteProfiles B3 DNA-binding domain profile. 191 288 IPR003340 GO:0003677
Viun11g02338 295 Pfam B3 DNA binding domain 194 287 IPR003340 GO:0003677
Viun11g02338 295 Pfam B3 DNA binding domain 26 101 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02338 Viun-Chr11 37570369 37572176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02338 12 284 B3 DNA Binding Superfamily AT5G18090 25.763 3.07e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun11g02338 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02338 - - vum:124823151 574.318