Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02331 ATGTCTTCATCAAAGGCCATCAGCTTCACAAACTTTTACCAAAACTCAGTGACTGTCATGGAGCCCGCAGAGGAATGTCTGGACTTCGAAGTTGGTTTTTATGAGCAATGGGGTAAAATGCTACTGCTGGGGACCAACTTCTTTAGCGATCCGAAAGGAAATACCATAAATATAGAGTTTGAGGAGGGTCTTTTGGGTCAGAGACAGTTTCGTGGTGTCCAGAGCATTCGGTCTTTTTATAACGTCAACGATGTTTATTATGTGTGTACTGTTTACTGTGGAGACCGATTTTTTCGTATAAGGCTTTTTGATCTGGACTGGAATGAGTTTGACTACCCTGGTACAGCAAGGACTTCTCTTGGATGTAACCCTTTGTCTTCAATAAGGTTTTTCCAAGCGTTTAGGGTGCAGTTTATCCCAGCGACGATGTTGATTACTGTCCCAGATTACTTTCAAATATTCTGTCGGGATAAACTTGCGTTTCATTACGCGATCAAGTTGTATGATCCCCTGTCAAAGATGTTTGAAATATATGTGGATAAAGATGAGAATTTGAGGATGGTCCTGTTTGGTTTTAGTAGGTACATTCCATATTATGGGTTGACTGGTCCGTGTTACTTACATTTAAACTATGTAGGAAACAATGTATTTCTTCATAAGATATTCTCGGCTGAAGGAGTAGAAATGGATTATAACAGAAATTCGGGCAGTGCTGCAAACACCCAAGTTCCAGTTGCTGCTCCTAATTTTCAGAAAGAATTAAGCAATTATGATGTTAAAGCATCTTCTTTGTATCTGGATTCCAAATTTGCAAAAGAATGCTTGATCAAGGGTCGCAAGAGCTACAGATTGACGAATGACCAAGCTCAATTCTGGGACTGTAAGATACGTTGGACGGGCAGAAGTTCGTATGAGTGTTACTTGACCTGTGGTTGGAAGAAGTTTTGCAAAGAAAACGGATTGGCTGCTGGTGATCGGATAAGATTTGTTGTGGAGGATGAAGAAAAGGGCGTAATCCACATATTGAAGAATTAG 1035 0.4039 MSSSKAISFTNFYQNSVTVMEPAEECLDFEVGFYEQWGKMLLLGTNFFSDPKGNTINIEFEEGLLGQRQFRGVQSIRSFYNVNDVYYVCTVYCGDRFFRIRLFDLDWNEFDYPGTARTSLGCNPLSSIRFFQAFRVQFIPATMLITVPDYFQIFCRDKLAFHYAIKLYDPLSKMFEIYVDKDENLRMVLFGFSRYIPYYGLTGPCYLHLNYVGNNVFLHKIFSAEGVEMDYNRNSGSAANTQVPVAAPNFQKELSNYDVKASSLYLDSKFAKECLIKGRKSYRLTNDQAQFWDCKIRWTGRSSYECYLTCGWKKFCKENGLAAGDRIRFVVEDEEKGVIHILKN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02331 344 SMART B3_2 250 344 IPR003340 GO:0003677
Viun11g02331 344 Pfam B3 DNA binding domain 250 342 IPR003340 GO:0003677
Viun11g02331 344 SUPERFAMILY DNA-binding pseudobarrel domain 248 341 IPR015300 -
Viun11g02331 344 Gene3D - 230 344 IPR015300 -
Viun11g02331 344 ProSiteProfiles B3 DNA-binding domain profile. 249 344 IPR003340 GO:0003677
Viun11g02331 344 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 220 333 IPR039218 -
Viun11g02331 344 CDD B3_DNA 248 343 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02331 Viun-Chr11 37525649 37527534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02331 254 332 REM Transcription Factor Family AT4G31650 32.099 4.09e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun11g02331 B3 8.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02331 - - vun:114170692 719.924