Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02325 ATGGAAGATCATTTTTCCCCAAAGGGGAATGAAACTGGCTATTGCACATCACCCTGTGCACAGTTGGAGGAATCAACATCGGTTGATGTTGGGATGAAAAAATCTGCTTCAGAGGACATGTTTAGCAATTTCTCTGAGCTCATGAACTTTGATACCTATGCTGGTTGGAGCAATAGTTCATCTATGACTTATCAGAGTTTGGCAAATGTGTTTTCATCCTTTTCCTCAGCATCATATCCACCATCCGATGGATTGAATCTGGTGGAACATGGCAATGTTCCATGCTTCATGACAGAAGTCAGTGAAATTCACAATGGTATGGAAAGTTCTCCTAGTTGTGAAGAGAGAGGTATATTTCAGCAAATGGATATCCAACTTGGTTTCTTAGATGAAGCAAATGATTCAAATAGCTTTGACTCAAAACAAAATCGTAATGGTTCATATCAGCAACTTAATACCTCAGACATGTGCAATTACTTGATATCCAGGTCATCGGGGAGGCCACTTGATGATAGAATGTTGAGGGCTTTGTCCTTCTTTATGGAATCAGTTGATGAGGGAATGCTGGCACAAGTTTGGGTACCTATAAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAACAACCTTATTTGTTAGATCCAAAGCTTGCAGGGTATAGAGAGGTGTCAAGGGCATTCACATTTTCTGCAGAAGGAAAGAAAGGATCATGTCCAGGGCTTCCTGCACGAGTGTTTGCATCACATGTTCCTGAATGGACTTCCAATGTTGGTTACTATAATAAAAATGAGTACTTAAGGTTGGACCATGCAATGAGTCATGAAATTCGTGGATCTATTGCTCTTCCTGTTTCTGATATGCATTCTCAAGAGCCATGTGCTGTATTGGAACTGGTCACTACAAAGGAAAAACCTAATTTTGACAGAGAATTAGAAATTGTTACTCATGCCCTCCAGCTTGTAAATTTAAAGACTACTATGCCTCCACGACTTCTTCCCCAGTGTCTATCAAGTAACAAAAGAGCTGCTTTAACAGAGATAGTTGATGTGTTACGTGCGGTGTGTCATGCACATAGGTTGCCACTAGCACTGACATGGATTCCCTGTTGCTACAGTGAGGGAATAGGAGATGAAGCTGAGAGAATACGGATCAAAGAAGGTCATACAAGTTCTGATGAAAAATGTGTGCTATGTGTTGAGGAATCAGCTTCCTATATAAATGATGGAGCAATAGGAGGATTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGGCAAGGTATAGCAGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTACACTGATGTGAAGACATATGATATTAGTGAATACCCTCTTGTTCATCATGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTCGGCTAAGGAGTACCTTTACCAATGATGATGATTACATATTAGAGTTCTTTCTGCCAGTGAACATGACAGGGAGTTCAGAGCAACAACTTTTATTGGATAATCTCTCAGGTACCATGAGGAGAATTTGTAGGAGTTTGAGAACAGTTTCAGATGCTGAAATAACAGGAATAGAAGGATCCGTAGCTGGGTTTCCAAAGGAAAAAATCACATATTTTTTTCCAATGTCCAGAAGAAACTCTCAGATAGCATTTATAAATGATGATCATGATTCGGTTCAGAAGATGTCCTTGAAGGCATCTAACAATGGAATTGAAGATGCTCATGGCCAGGTGATGAATGGACCAAGAAAACAGATTGAGAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGTTTGAGTGTTCTACAACAGTACTTCTCTGGTAGTCTGAAAGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCTCGGAAGATCAATAAAGTGAATCGTTCATTAAAGAAGATACAAACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCTTATACTGGGGGGTTTATAGCTGGAGGATCACTGATGCAAGAAATTGACACACATAAATATATTCTGTTTCCTGAGAAAAGTGCTGTGAAAGATCCTAAGCAAGCAACACAAAAACCAGTCTCAGTAGTTTCAGCACCAGGCAGCACTAGTGAGAATTCAACAATTAAGTTGGATGATGATGATGGTGTTTGTTTGGTGGGAAACAAGATTGTAGACTCCAGAAGTGTACTTTTATCTCATACCAGTGAGGGAGGATTGAAAAAAGACAATGCTTCTTCTGGTGATTGTTGTGAAGATTCAAAGTCAGTGGCCAAGGCCAAGAATCAGGATTGTCCTGAACAAACATGTTCAATATCCTTGGTTACTGATGAGGCTGAAGTTGGAGTAGATGGGGGAGAGGGAATTGAAGAACATAACCACCTTAATTCTTCAAGCACCACAAACTCATCCAATGGCTCTGGCTCAATGATGCATGGCAGTTCATCATGCTCTCAAAGCTTTGAGAATCAAAAACACTCAAAAGTAAAATCAACTTGTGTTGATAGTGAGTCAAAGATGATTGTGAAAGCTAGCTATAGGGGAGACACTATTCGTTTCAAGTTTGATCCATCCGCAGGTTGTTTGCAGCTATATGAAGAAGTTGCAACAAGGTTCAAACTCCAAAACGGGTCATTCAAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGAGAATGAGTCAGATTTGCAAGAGTGTGTAGAAATTTTGCATGACATTGGCACACGTTGTGTGAAGTTTCTGGTTCGTGATGTGGCTTGTGTTTTGAGCAGTTGTGGCAGCAACAATTGCTTCTTGTCAGAGAGTTCATAG 2874 0.4022 MEDHFSPKGNETGYCTSPCAQLEESTSVDVGMKKSASEDMFSNFSELMNFDTYAGWSNSSSMTYQSLANVFSSFSSASYPPSDGLNLVEHGNVPCFMTEVSEIHNGMESSPSCEERGIFQQMDIQLGFLDEANDSNSFDSKQNRNGSYQQLNTSDMCNYLISRSSGRPLDDRMLRALSFFMESVDEGMLAQVWVPIKHGDEFILSTSEQPYLLDPKLAGYREVSRAFTFSAEGKKGSCPGLPARVFASHVPEWTSNVGYYNKNEYLRLDHAMSHEIRGSIALPVSDMHSQEPCAVLELVTTKEKPNFDRELEIVTHALQLVNLKTTMPPRLLPQCLSSNKRAALTEIVDVLRAVCHAHRLPLALTWIPCCYSEGIGDEAERIRIKEGHTSSDEKCVLCVEESASYINDGAIGGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTFTNDDDYILEFFLPVNMTGSSEQQLLLDNLSGTMRRICRSLRTVSDAEITGIEGSVAGFPKEKITYFFPMSRRNSQIAFINDDHDSVQKMSLKASNNGIEDAHGQVMNGPRKQIEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSLMQEIDTHKYILFPEKSAVKDPKQATQKPVSVVSAPGSTSENSTIKLDDDDGVCLVGNKIVDSRSVLLSHTSEGGLKKDNASSGDCCEDSKSVAKAKNQDCPEQTCSISLVTDEAEVGVDGGEGIEEHNHLNSSSTTNSSNGSGSMMHGSSSCSQSFENQKHSKVKSTCVDSESKMIVKASYRGDTIRFKFDPSAGCLQLYEEVATRFKLQNGSFKLKYLDDEEEWVMLENESDLQECVEILHDIGTRCVKFLVRDVACVLSSCGSNNCFLSESS 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02325 957 ProSiteProfiles RWP-RK domain profile. 579 667 IPR003035 -
Viun11g02325 957 SUPERFAMILY CAD & PB1 domains 852 940 - -
Viun11g02325 957 SMART PB1_new 857 939 IPR000270 GO:0005515
Viun11g02325 957 MobiDBLite consensus disorder prediction 709 725 - -
Viun11g02325 957 MobiDBLite consensus disorder prediction 810 837 - -
Viun11g02325 957 Pfam RWP-RK domain 599 647 IPR003035 -
Viun11g02325 957 Pfam PB1 domain 860 938 IPR000270 GO:0005515
Viun11g02325 957 MobiDBLite consensus disorder prediction 705 726 - -
Viun11g02325 957 Gene3D - 853 936 - -
Viun11g02325 957 PANTHER PROTEIN NLP8 134 950 IPR045012 GO:0003700
Viun11g02325 957 ProSiteProfiles PB1 domain profile. 857 939 IPR000270 GO:0005515
Viun11g02325 957 MobiDBLite consensus disorder prediction 803 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02325 Viun-Chr11 37487398 37492338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02325 1 953 NLP Transcription Factor Family AT2G43500 49.275 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Viun11g02325 PB1 2.5e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02325 - - gmx:100793770 1592.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03728 5 46242014 46249322 Viun11g02325 11 37487398 37492338 PCT