Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02309 ATGCCACTTCCAGCGAAACCAATGAGGGACTCCGACGAGTTGGCGAGCCCTTCGAACAACCTGTGGGTGGGGAATCTGGCGCCGGACGTCACTGACGCCGATCTCATGGAACTTTTCGCCAAATACGGTGCGCTCGATAGCGTAACTACTTATTCCGCTCGCAGTTATGCCTTCATATACTTCAAGCGCGTCGAAGACGCCAAAGCCGCAAAAAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCAAAGGCATGCAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGAAGATTTGGAAGCTGAATTTCGTAAAATTGGTAAAATTGAGGATTTTAAATTCTACAGAGACCGAAATACGGCATGTGTTGAATTTTTCAATTTGGAAGATGCTTCTCAGGCCATGAAAATAATGAATGGGAAAAGAATAGGTGGGGAGCATATTCGTGTTGACTTCCTTCGATCCCAAACTATAAAAAGGGATCAGTTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCTTGGGACCTAGTGATGCTTATTCTGGACAGAAAAGACCGCTGCATTCACAGGCTCCAATGGGGAGGAAAGGCGATGGTCAACCAAGTAATGTTTTATGGATTGGTTATCCTCCTGCTGTTCAGATTGATGAACAAATGCTCCACAATGCTATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCCTTGAGGAATTATTCTACTGTAGAGTTTAGAAGTGTTGATGAAGCCCGACGTGCTAAAGAGGGCCTTCAAGGGCGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCCAGCAATGACCTAGTACATGGCAGTGATTATCCTGGCTTTTTTGCTGGAAGTAATGGACCTAGGCCTGAGGTATTGCTGAATGAGAATCCATTCCGACAATTACAAATAGATGCTTTTGGCCATAATCGTCCAATGGTTCCAAATAATTTTACTGGTCAATTACCACCTACTGGTGTTATGGGTCCAAATGTACCATTGCGACCTTTTGGTCCCCACAGCGGTGTTGACTCTGTTATTTCTGGCCCTGAGTTTAATGAGATTAATGCCCTCCACAAATTTCAGGATGGTAGCTCCAAGAGTAACATGGCTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGTATGCTTTCTTCTCCTGCACCAGGTGCTAGGCATCCTACAAGGTCAACCACCGGTGCATGGGATGTACTTGACATAAACCATTTTCCTAGAGATTCTAAACGTTCAAGGATTGATGGACCCTTACCTGTTGACGAAGCCCCATTTCCATTGAGGAATATAGATGATCGTGGGTTAGCTCTGGAGCAATCTTATGGGACAGATCCATCAATTGATGGAGGTGGTTCTGGTCCATTTGCAAACATTCAAGGAAAAAATCACCTTGGTCCATTGAACTCAAGGATTATAACTGGAGTACATGGTATGGTCCAACCTGATAATGATCATATTTGGCGTGGAATCATTGCAAAAGGTGGAACTCCTGTTTGTCGGGCTAGATGTGTACCAATTGGGAAAGGGGTTGGGACTGAGCTTCCTGATGTTATTGATTGCTCAGCTAGGACGGGATTGGATATACTCACTAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGATGATTTTGCATCATATACTGAATTCCTTCGCTATCTCAGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACATTGTTCTTGGTGCCTCCTTCTGATTTTCTCACTAGAGTTTTGAAAGTCAGTGGACCTGAGCGACTCTATGGTGTAGTTCTGAAGTTTCCTCAAGTGGCAAGTAGTGCACCTATGCAACAAGCATCGAACTTGCCTGTACCGACAAGTCAGTTTATGCAGCAAATTCCTCCTTCACATACTGAATATGGTTTGATTCCTATCAAAGAGGAACAGGTTGCGTCAATGGATTATAACAGACAATTGCGTGAGGATTCTAAGCTTCCTAGTAAACCAGCCTACCCGCCTACAGGAGGGCCTCCTTCAGTTCATTCTGTGCCTCCAGATTATGCTCCTAATAATGCTATTGCTGGGTCCCAAGCAGGAGTTGCATTAACTCCTGAGCTGATTGCAACTTTAGCATCTTTTCTCCCTTCGACTACACCATCATCTGCAACTGATGGTGCCAAGCCTGGAGTAGGTTCCTCGACCATGAAGCCTCCTTTTCCTCCTGTGGCACCAAATGATGGAAATCAATCCTATATATGGAAACAGGACAGTCAAAGTGCTGATCAAACCACTCATCCTCCTCAACAGTTGAGAAGTATGTATAGCGTTCACAATGCTCACTACCAGCCATATCCACCAGCATCTGCTCCAGCTGGCAATCCTGCTCAAGTGGTCTCTAGCAGTTCTCACATCCAAGACACTGCAGCCAGCATGCATCAGCAAGGTGCCGTTTCATCCAGACACATGCCTAATTTCATGATGCCCACTCAAAGCGGACAAGTAGCTGCATCTCCTCATGGCAGTCAGCATTATCAAGTTGAAGTCTCCCCAAGTAATCAGAAAGGCTTTGGAATTGTGCAGGGAACAGATGCCTCTGTCTTATACAATTCTCAGGCATTCCAGCAACCTAATAACAATCCACCGTCTTTCCAGCAACCTAATAATTCTATTGCCTTAACTAATCAAGTTAGTGGTGCTAATTCTTCACAGCAGCAGACTGCCAAGCCATATACAGTAGACCAAGTAAACTCAGACACCCCAAATCAGCAACTTTCTGTTTTTGGAGTCGGTCAAGGCACCCCAGAGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTTCTCCAAATACAACAAAAGCAACAACAAGCCCCAGGAGGTCATGGACCAGGAATTCAACAATGA 3000 0.446 MPLPAKPMRDSDELASPSNNLWVGNLAPDVTDADLMELFAKYGALDSVTTYSARSYAFIYFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKACKQLWVGGISPAVTKEDLEAEFRKIGKIEDFKFYRDRNTACVEFFNLEDASQAMKIMNGKRIGGEHIRVDFLRSQTIKRDQLLDYGQFQGKSLGPSDAYSGQKRPLHSQAPMGRKGDGQPSNVLWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRNYSTVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSNDLVHGSDYPGFFAGSNGPRPEVLLNENPFRQLQIDAFGHNRPMVPNNFTGQLPPTGVMGPNVPLRPFGPHSGVDSVISGPEFNEINALHKFQDGSSKSNMAPNWKRPSPPAPGMLSSPAPGARHPTRSTTGAWDVLDINHFPRDSKRSRIDGPLPVDEAPFPLRNIDDRGLALEQSYGTDPSIDGGGSGPFANIQGKNHLGPLNSRIITGVHGMVQPDNDHIWRGIIAKGGTPVCRARCVPIGKGVGTELPDVIDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVSGPERLYGVVLKFPQVASSAPMQQASNLPVPTSQFMQQIPPSHTEYGLIPIKEEQVASMDYNRQLREDSKLPSKPAYPPTGGPPSVHSVPPDYAPNNAIAGSQAGVALTPELIATLASFLPSTTPSSATDGAKPGVGSSTMKPPFPPVAPNDGNQSYIWKQDSQSADQTTHPPQQLRSMYSVHNAHYQPYPPASAPAGNPAQVVSSSSHIQDTAASMHQQGAVSSRHMPNFMMPTQSGQVAASPHGSQHYQVEVSPSNQKGFGIVQGTDASVLYNSQAFQQPNNNPPSFQQPNNSIALTNQVSGANSSQQQTAKPYTVDQVNSDTPNQQLSVFGVGQGTPEEADKNQRYQSTLQFAANLLLQIQQKQQQAPGGHGPGIQQ 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02309 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
Viun11g02309 999 Pfam SPOC domain 506 623 IPR012921 -
Viun11g02309 999 MobiDBLite consensus disorder prediction 773 792 - -
Viun11g02309 999 SUPERFAMILY RNA-binding domain, RBD 97 287 IPR035979 GO:0003676
Viun11g02309 999 PANTHER RNA RECOGNITION MOTIF-CONTAINING 14 89 - -
Viun11g02309 999 FunFam Flowering time control protein FPA 11 93 - -
Viun11g02309 999 MobiDBLite consensus disorder prediction 187 212 - -
Viun11g02309 999 Gene3D - 5 94 IPR012677 -
Viun11g02309 999 Gene3D - 95 173 IPR012677 -
Viun11g02309 999 MobiDBLite consensus disorder prediction 695 709 - -
Viun11g02309 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 289 IPR000504 GO:0003723
Viun11g02309 999 FunFam flowering time control protein FPA 209 304 - -
Viun11g02309 999 MobiDBLite consensus disorder prediction 684 713 - -
Viun11g02309 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Viun11g02309 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Viun11g02309 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Viun11g02309 999 CDD RRM_SF 21 87 - -
Viun11g02309 999 SMART rrm1_1 217 285 IPR000504 GO:0003723
Viun11g02309 999 SMART rrm1_1 20 87 IPR000504 GO:0003723
Viun11g02309 999 SMART rrm1_1 97 164 IPR000504 GO:0003723
Viun11g02309 999 MobiDBLite consensus disorder prediction 740 792 - -
Viun11g02309 999 CDD SPOC_FPA-like 511 631 - -
Viun11g02309 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Viun11g02309 999 Gene3D - 210 298 IPR012677 -
Viun11g02309 999 FunFam Flowering time control protein FPA isoform A 94 208 - -
Viun11g02309 999 SUPERFAMILY RNA-binding domain, RBD 6 92 IPR035979 GO:0003676
Viun11g02309 999 MobiDBLite consensus disorder prediction 382 418 - -
Viun11g02309 999 CDD RRM_SF 98 164 - -
Viun11g02309 999 MobiDBLite consensus disorder prediction 920 944 - -
Viun11g02309 999 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02309 Viun-Chr11 37408835 37420984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02309 20 279 Eukaryotic Initiation Factors Gene Family AT2G23350 23.050 7.44e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02309 - - gmx:100777570 1751.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03706 5 46074213 46081639 Viun11g02309 11 37408835 37420984 PCT