Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02304 ATGGAGAGAGACAAAGACAACAAATCCCCTCCTCTGCCACCTTCATCTTCCTCGTCCCAACCTTTCAGCCATGACATCGTCGGAATGCCCGATAATCCACCCAAAAACAGGGGCCATAGACGCGCCCATTCCGAGATTATCACCCTTCCCGATGACCTCACCTTCGACACTGATCTCCCCCTCGATGACGACTTCCTCGCCCTCGTAGATCATATCCATTCCCCTCCGTTGCCTGAAGATGACAACAAAATCATCGTCAACAACAACGATTACATCGGCAACAATAACGATAACAACGTTCGTAACGAAAGGCCGAGGGTTAGACACCAGCATAGCCATTCCATGGATTTGTCCATCCAGCCGGAGATGCTGGTCTCCGGTGCCGATGACGTGTCCGGCGTGGATACCAAAAGGGCTATGTCGGCTGACAAGCTTGCTGAGCTTGCCTTAATTGATCCCAAGCGGGCTAAAAGGATATGGGCAAACCGACAGTCTGCTGCAAGATCAAAAGAAAGGAAGATGCGTTACATTTCTGAGCTTGAAAGGAAAGTGCAGACATTGCAAACAGAAGCAACATCCTTGTCTGCACAATTAACTCTCTTGCAGAGAGATACAAACGGACTAAATGCTGAAAACGGTGAGTTGAAGTTGCGTTTGCAAACAATGGAGCAACAGGTTCACTTGCAAGATGCATTAAATGATGCATTAAAAGAAGAAATTCAGCATTTGAAATTAATGACTGGACAAGCCATGCCAAATGGAGGACATACAAACTTTGCTTCATTTGGTGGTGGGCAACAATTCTATCCCAATAATCACGCCATGTACACTCTTTTGGCTGCACAAAAGTTTCAACAACTTCAAATTCAATCCCAGAAGCAGCAGCAGCATCAACTTCAGCAGCAACAACAACAGTTTCAGCAGCAACAACTTCAGCATCAACTGCAACAGCAACACCAACAACACCAACAACACCAACAACACCAACAACAACAGCAACAACAAACAACAGCAACAGGTACTGTAACATCAACAAATGGGGTTCTTGAATAG 1053 0.4596 MERDKDNKSPPLPPSSSSSQPFSHDIVGMPDNPPKNRGHRRAHSEIITLPDDLTFDTDLPLDDDFLALVDHIHSPPLPEDDNKIIVNNNDYIGNNNDNNVRNERPRVRHQHSHSMDLSIQPEMLVSGADDVSGVDTKRAMSADKLAELALIDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLQRDTNGLNAENGELKLRLQTMEQQVHLQDALNDALKEEIQHLKLMTGQAMPNGGHTNFASFGGGQQFYPNNHAMYTLLAAQKFQQLQIQSQKQQQHQLQQQQQQFQQQQLQHQLQQQHQQHQQHQQHQQQQQQQTTATGTVTSTNGVLE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02304 350 Coils Coil 289 328 - -
Viun11g02304 350 Pfam bZIP transcription factor 154 208 IPR004827 GO:0003700|GO:0006355
Viun11g02304 350 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 152 215 IPR004827 GO:0003700|GO:0006355
Viun11g02304 350 Coils Coil 170 239 - -
Viun11g02304 350 MobiDBLite consensus disorder prediction 1 41 - -
Viun11g02304 350 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 8 338 - -
Viun11g02304 350 FunFam probable transcription factor PosF21 153 206 - -
Viun11g02304 350 SUPERFAMILY Leucine zipper domain 154 205 IPR046347 GO:0003700|GO:0006355
Viun11g02304 350 SMART brlzneu 150 214 IPR004827 GO:0003700|GO:0006355
Viun11g02304 350 MobiDBLite consensus disorder prediction 317 350 - -
Viun11g02304 350 CDD bZIP_plant_RF2 155 204 IPR044759 GO:0003700|GO:0006355
Viun11g02304 350 Gene3D - 153 206 - -
Viun11g02304 350 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02304 Viun-Chr11 37396671 37401658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02304 10 281 bZIP Transcription Factor Family AT1G06070 62.951 6.85e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Viun11g02304 bZIP_1 6e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02304 - - vun:114169967 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03705 5 46067070 46070538 Viun11g02304 11 37396671 37401658 PCT