Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02299 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCCCCGGCAACAGTGATTTGTTGCGCAGATGAGGCAGTTTTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCATCAGAGGCTTCTTCTTCAATGTTTATCAAACAAGCTTCCCAGATGTGACATATGTCAGGATAAGGCAGCTTTCATATTCTGTGTTGAGGACAGAGCACTCTTGTGTAAAGACTGTGACGAGCCAATTCATGTTGCTGGAAGCCTTTCTGCGAACCACCAGCGGTTTCTTGCTACTGGTATTAGGGTGGCTTTGGGTTCTAATTGCACCAAAGGCAATGAAAAGGGTCACATGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCATCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAGTCACCAGACAAAGCTCAGAAGCAGTCTCTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGCAGGTCTTTTTGGTGAACAGTTTCCTCAGGAACCCTTAGCCGCTGCTGAAGTTCCCCAGCTTCCAGTGACACATACCAGCAATGTTACCTCACAGAAAGCTTCTTCTAAGTCCTTCATGTCTTACAAAAAGCCTAGGATTGAAGTCCTAGATGAAGATGATGAGGAACACTTCACTGTTCCTGATTTAGGGTAG 726 0.4477 MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVALGSNCTKGNEKGHMEPSNPNAQEVPVKVPSQQVPSFTSSWAVDDLLELTDFESPDKAQKQSLEFGELEWLADAGLFGEQFPQEPLAAAEVPQLPVTHTSNVTSQKASSKSFMSYKKPRIEVLDEDDEEHFTVPDLG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02299 241 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 240 - -
Viun11g02299 241 CDD Bbox1_BBX-like 5 47 - -
Viun11g02299 241 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Viun11g02299 241 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Viun11g02299 241 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Viun11g02299 241 Gene3D Classic Zinc Finger 1 94 - -
Viun11g02299 241 CDD Bbox1_BBX-like 57 98 - -
Viun11g02299 241 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Viun11g02299 241 SMART bboxneu5 4 47 IPR000315 GO:0008270
Viun11g02299 241 SMART bboxneu5 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02299 Viun-Chr11 37381664 37384584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02299 1 161 Orphan Transcription Factor Family AT1G06040 69.048 6.15e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Viun11g02299 zf-B_box 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02299 - - gmx:100779183 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03698 5 46033024 46035290 Viun11g02299 11 37381664 37384584 PCT