Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02272 ATGGGGCACAGTTCGAAGAAGAAGAAGCGCGGAGGCGGGAGCGGTCGCCGGAGCAAGGGGAGAACGCAGTCCAAAGATCACGCTTCTCAATTCGGCGCCGACGATTACGACCAGCTCTCCGAAGAGATTACCGCATTATGCGCTATTTTCCAAGAAGACTGCAAAGTTCTTCCAGGATCGCCTCCTCGTATAGTTATTAAGCTCAGGCCTTACTCAAAGGACATGGGCTATGAAGATCTAGATGTCTCTGCTTCTCTTGTTGTCAGGTGCTTGCCTGGGTATCCTTTCAAGTGCCCCAAGCTGCAGATTACACCGGAGAAAGGGTTATCAGAAGCTGATGCTGATAAGCTTTTATCTCTCCTCCATGATCAGGCTACATTAAATGCTAGGGAGGGACGAGTAATGATCTATAATTTGGTTGAGGCTGCTCAAGAGTTTCTTTCTGGTATTGAGCCAATTGGCATATCAAATGATTCTCTTCTACACTCAACTGTGGAAAGCAATGAAGAATTGTTTACCAAGGATAAGACATCTTTAAGTAAGAAGGGTTCTTTTGTTTATGGTTTTATAGACCTTTTCAGTGGCTATGGAGAAACATGGAGTTGGGGTTTTGGAATGGATGAAACTGCCGGAAAAAGTTCTTCTCTTCCCTTGTCTAATTTAGATGGCTCAAAACAACGCTTTGAAACTCATGAGAAGAAATTTAATAGTAAGGAAACACGGTTAGTTATGCAAGAACATCCTGCCAAATTAGATACTGTCGGAGAAGTTATTGAAGACAGCAAAAATAGTTTATCTTTGACTAGTTCAAGTACATCTTCAGAAGAGGATTTTGTAGTAAACGACGATGAAGGTGAGAAAGAGTATTTTATTGTTGATAAGTATACAACTGAAGATAATGAAGGTATTAATGAAAGTGAGTCTCCAGAGGCTCTTCCTTCTGACTCCTTGCCTCGTCCTCAGTCATCTCAAACAATTGAAAAGGATATACTAATGGTTCACATGCTTCGCCTTGTTTGTACTTCTAAGGGATCATTAACTGACTGTTTGCCACAAGTGGTAACAGAGCTGTACAATTTAGGGATCATTACTGATTTAGCACGTGATATGGCATCTAAACCACCTTCCATTTTCAACAAAACCTTTGATCGTGTTTTCCAAAAACACCTGGCTTCATCCAAAATATCTCAATTTTGGAATCCCGATCTTGGAGGCTCAAACACAGTTTCTCACAGTTCTCGATATTTGAATGACTTTGAGGAGCTGCGTCCTCTAGGTCATGGTGGTTTTGGTCATGTTGTATTGTGCAAAAATAAACTTGATGGAAGGCATTATGCAGTAAAGAAAATTCGCCTTAAGGACAAAAGCATGCCTGACCGAATATTAAGGGAAGTAGCTACACTTTCTCGTTTACAGCATCAACATGTCGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTTCTGATTCTTATGGTGATTCTACTTGGGGTTCAAAGACTACAGTAAGCTCTACTTTCAGCTTTAACGCTGCAACTTCCAATGATGTCTTTGGGCATGAGAATCAGCTTGAATCAACTTACCTTTATATACAAATGGAATACTGTCCCAGGACTCTTCGCCAGAAGTTTGAATCATATAATGATTTTGACAAAGAATCGGCTTGGCATTTATTTCGTCAAATAGTGGAAGGCTTGTCACACATACATGGACAAGGAATAATTCATCGGGACTTAACACCAAATAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGACTTTGGTCTTGCAAAGTTCTTGAAGTTAGAGCAGCTGGATCAAGATGTGGGCCACACTGCTGATGCAACTGGAGTTTCCATTGATGGCACTGGACAAGTGGGGACATATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGCAATGGAGAGACACGTTGTTTTATCTGATTTGAAACAGAAAGGGGAAGTTCCACCAATTTGGGTCGCTGAGTTTCCAGAACAGGAATCCTTACTGAGGCAGTTAATGTCTCCGGCTCCTTCAGATCGCCCTTCTGCCATAGAACTTCTGCAAAATGCATTTCCTCAGCGAATGGAGTCTGAATTATTGGATGATATCCTTAGAACAATGCAGAAATCAGAGGATACAAGCATATATGATAAAGTTTTAAGTGCTATCTTTGACGAAGAGATGCTAAGCACAAAACACATTCGTCAGGTTGGTAGATTGGGATCAGTTGGAGATAGCAGTTCCTCCATTCAGTACACAGAATTTGAAACAGAGGTTCGGGATTATGTTGTAGATATGAACAGGGAAATTTTTAGACAGCATTGTGCAAAGCACCTTGAAATATCAACAATGAGATTATTGGAAGATTGTCCACAGTTTAATAGAAATGCAGTTAAACTTCTGACGCATGGAGGAGACATGCTTGAACTTTGCCACGAGTTGCGTTTTCCTTTTGTGAACTGGATTATATCTAACCAGAAATCTTCATTTAAACGATATGAGATATCATGTGTCTTTAGAAGAGCAGTTGGACATTCATCACCAAATCGCTACCTCCAGGGAGATTTTGACATTATTGGTGGCACCTCGGCATTGACAGAAGCAGAGGTCATAAAGGTCACAAGGGACGTAGTCACATGTTTTTTTCAAGCAGATTCATGTGACATTCATCTCAACCATGGTGACCTTCTGGATGCAATTTGGTCATGGACTGGAGTCAAGGTGGAACACAGACTCAAAGTCGCAGAGCTTCTCTCAATGATGGGTTCTTTGCGCCCACAATCCTCAGAAAGGAAATCAAAATGGGTCGTGATAAGGCGGCAACTTTTGCAGGAACTGAATTTAGCAGAGACTAAGGTAAATAGGTTACAGACTGTAGGTTTAAGATTTTGTGGATCTGCAGATCATGCACTCCCCCGATTAAGAGGAGCTCTTCCATCTGATAAACGTACATTCAAGGCACTAGATGAGTTGTCTGAGCTTGTCAGTCTCCTGAGAATTTGGAGGATTGACAGAAATATATATATCGATGCATTAATGCCACCAACTGAAAGTTATCATAGAGATTTGTTTTTTCAGGTATACTTAAGGAAGGAGAACAGTCCTGGGTCTCTCTCTGAAGGTGTATTGCTGGCTGTTGGTGGTCGATATGACTACTTGCTTCATCAGCTGTGGCGAAGTGACTCTAAAGGAAATCCTCCAACTGGTGTGGGGACTAGCATTGCACTGGAGACAATAATTCAGAATTGTCCTGTAGATATCAAACCCAATAGAAACGAAGGCACCACCAGTATTCTTGTCTGTTCTAGAGGTGGAGGAGGTCTCCTGGTGGAGCGCATGGAGCTAGTTGCGGAATTATGGGAGGAGAACTTTAAGGCTGAATTCGTTCCTACCCCTGATCCAAGTCTTACAGAGCAGTATGAGTATGCTAATGAACATGGTATAAAATGCCTTGTCATCATCGCAGATACAGATTTCTCCTTGACAGATTCTGTTAAGGTTCGACACCTTGAACATAAGAGGGAGAAAAGTGTGGAGAGAAAAAACCTAGTTAAGTTTCTATCGGAAGCCATGGCAACACAATTTAGAAATCCCTCCATTTGGATTTGA 3702 0.4149 MGHSSKKKKRGGGSGRRSKGRTQSKDHASQFGADDYDQLSEEITALCAIFQEDCKVLPGSPPRIVIKLRPYSKDMGYEDLDVSASLVVRCLPGYPFKCPKLQITPEKGLSEADADKLLSLLHDQATLNAREGRVMIYNLVEAAQEFLSGIEPIGISNDSLLHSTVESNEELFTKDKTSLSKKGSFVYGFIDLFSGYGETWSWGFGMDETAGKSSSLPLSNLDGSKQRFETHEKKFNSKETRLVMQEHPAKLDTVGEVIEDSKNSLSLTSSSTSSEEDFVVNDDEGEKEYFIVDKYTTEDNEGINESESPEALPSDSLPRPQSSQTIEKDILMVHMLRLVCTSKGSLTDCLPQVVTELYNLGIITDLARDMASKPPSIFNKTFDRVFQKHLASSKISQFWNPDLGGSNTVSHSSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVSDSYGDSTWGSKTTVSSTFSFNAATSNDVFGHENQLESTYLYIQMEYCPRTLRQKFESYNDFDKESAWHLFRQIVEGLSHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDVGHTADATGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKQKGEVPPIWVAEFPEQESLLRQLMSPAPSDRPSAIELLQNAFPQRMESELLDDILRTMQKSEDTSIYDKVLSAIFDEEMLSTKHIRQVGRLGSVGDSSSSIQYTEFETEVRDYVVDMNREIFRQHCAKHLEISTMRLLEDCPQFNRNAVKLLTHGGDMLELCHELRFPFVNWIISNQKSSFKRYEISCVFRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDVVTCFFQADSCDIHLNHGDLLDAIWSWTGVKVEHRLKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELNLAETKVNRLQTVGLRFCGSADHALPRLRGALPSDKRTFKALDELSELVSLLRIWRIDRNIYIDALMPPTESYHRDLFFQVYLRKENSPGSLSEGVLLAVGGRYDYLLHQLWRSDSKGNPPTGVGTSIALETIIQNCPVDIKPNRNEGTTSILVCSRGGGGLLVERMELVAELWEENFKAEFVPTPDPSLTEQYEYANEHGIKCLVIIADTDFSLTDSVKVRHLEHKREKSVERKNLVKFLSEAMATQFRNPSIWI 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02272 1233 Pfam Protein kinase domain 419 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02272 1233 ProSiteProfiles RWD domain profile. 41 150 IPR006575 GO:0005515
Viun11g02272 1233 CDD STKc_EIF2AK4_GCN2_rpt2 412 719 - -
Viun11g02272 1233 Gene3D Transferase(Phosphotransferase) domain 1 538 732 - -
Viun11g02272 1233 FunFam eIF-2-alpha kinase GCN2 781 1117 - -
Viun11g02272 1233 SUPERFAMILY UBC-like 36 147 IPR016135 -
Viun11g02272 1233 MobiDBLite consensus disorder prediction 1 33 - -
Viun11g02272 1233 MobiDBLite consensus disorder prediction 307 322 - -
Viun11g02272 1233 Gene3D - 1124 1224 IPR036621 -
Viun11g02272 1233 ProSitePatterns Protein kinases ATP-binding region signature. 425 449 IPR017441 GO:0005524
Viun11g02272 1233 Pfam RWD domain 38 147 IPR006575 GO:0005515
Viun11g02272 1233 FunFam Histidine--tRNA ligase, cytoplasmic 1124 1223 - -
Viun11g02272 1233 PANTHER HISTIDYL-TRNA SYNTHETASE 777 1227 - -
Viun11g02272 1233 MobiDBLite consensus disorder prediction 1 16 - -
Viun11g02272 1233 SMART RWD2001b 41 150 IPR006575 GO:0005515
Viun11g02272 1233 SUPERFAMILY Protein kinase-like (PK-like) 415 744 IPR011009 -
Viun11g02272 1233 SUPERFAMILY Class II aaRS ABD-related 1129 1223 - -
Viun11g02272 1233 FunFam eIF-2-alpha kinase GCN2 30 154 - -
Viun11g02272 1233 Gene3D Bira Bifunctional Protein; Domain 2 781 1117 IPR045864 -
Viun11g02272 1233 ProSitePatterns Tyrosine protein kinases specific active-site signature. 574 586 IPR008266 GO:0004672|GO:0006468
Viun11g02272 1233 SUPERFAMILY Class II aaRS and biotin synthetases 783 1112 IPR045864 -
Viun11g02272 1233 Gene3D Ubiquitin Conjugating Enzyme 29 153 IPR016135 -
Viun11g02272 1233 FunFam eIF-2-alpha kinase GCN2 539 732 - -
Viun11g02272 1233 Pfam Anticodon binding domain of tRNAs 1129 1225 IPR024435 -
Viun11g02272 1233 Coils Coil 970 990 - -
Viun11g02272 1233 ProSiteProfiles Protein kinase domain profile. 419 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02272 1233 Pfam Histidyl-tRNA synthetase 869 1109 IPR041715 -
Viun11g02272 1233 MobiDBLite consensus disorder prediction 298 322 - -
Viun11g02272 1233 Gene3D Phosphorylase Kinase; domain 1 407 535 - -
Viun11g02272 1233 FunFam eIF-2-alpha kinase GCN2 407 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02272 Viun-Chr11 37289223 37307689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02272 408 722 MAP Kinase Kinase Kinase AT1G63700 26.006 9.54e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Viun11g02272 Pkinase 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02272 K16196 - gmx:100797996 2172.51