Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02260 ATGTATCCAAAACGGTCAGGCCAAGATGGCCCTGATTTGAGACAAGTGCGCTCAAGTGACAGGATCAAGACAAGGCCAAGCATTTATGGCCGACCATACTTGTTTTATAACCAAAATCTTAGGCGCACAAGGAAAAACAAGAACAAAACAAGGACTGCAGCTTCTCAGATTGCCAAAATGTTGCGTCCAGGGAATCGGAAACAACAAGATTCTAATGCTAATTCTGGCTCTGCCAACCTTCGCCGTTCAACAAGGAAGAGAAGGCTTAATGTAAATCTTGAAGATTTTACAGACAGCTCTGGAGCTGAAGATGAAGACTTGATGAGACCTGCATATCCCTCATTGAGAAACCGGATTAAAAATAGAGTCAAACAGGATGGTTTGATGTCTTCTAAGCGCAAAAGAGCAGCTGATACTAAGCCAACACCTCGACGTGAAGGTTTACGTCCTCGTCGTTCAAAGGGTGCTGTGATAGAACGATTGATTTCAGAATCAGATGATGAGCAAGATCTGTCTGAGGAAAAGGTTGATCAAGATGAAACAGAAAATGGAAATGATGCTGAGGAAAATGATGCAGATGATGGTCAAAATGAGATTGAGGGGGACGCTGAGGGTGAAGATGAAGGTGAGGATGAAGGTGATGAAGATGGTGATGATGAAGAGGGGGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGGAATCGTTCAGATGTCCGGAGGTTCTCTATGGAGGAAAGAAAGGCTCGGCCTAGGTCTCCTCGAAGAGTGTTACATCAAGGTATGGGTACCAAGGTCAGCAGGGATGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGTTTAGCAAGGCCTGAAGATTCTGATGACTCACTTCTTGTGGATGAGCTGGACCAAGGGCCAGCTATTTCATGGGGGCGAGGTGGTAACAGATCTGGTCCACCTTGGCTTTTTGGAGGCTTAGACACGCATGGAACAACAGCTTTTGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCTTTGGCTACTCTTACATCTGGGATTCAAACTGCTGGACCAAGCTCTAAGGGTGGGGCAGATATCCAACCCTTACAGGTTGATGATAGTGTTAGTTTTGATGATATAGGAGGGCTTTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGGGTGTTGTTGTGTGGGCCCCCTGGCACAGGGAAAACATTGATTGCAAGGGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAAAAGGTTAGCTTTTACATGCGCAAAGGTGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAAATAGACGGACTTGCACCCGTGAGGTCTAGCAAGCAAGAACAAATTCACAATTCAATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGACTCTCGTGGGCAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTACGACGCCCTGGTAGGTTTGATCGTGAGTTTAACTTTCCCTTACCTGGTTGTGAGGCACGTGCCGAGATATTAGACATTCATACTCGTAAGTGGAAACATCCTCCTCCAAATGAGCTGAAAAAGGAACTTGCAGCCAGTTGTGTAGGTTACTGTGGTGCTGATCTGAAAGCTCTTTGTACTGAAGCTGCCATTCATGCATTCCGGCAAAAGTATCCACAAGTTTATACAAGTGATGACAAATTTGTTATAGATGTTGATTCTGTCAAGGTAGAAAAGACTCATTTTATTGAAGCAATGTCTACTATTACTCCTGCTGCTCATAGAGGAGCCATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTCCAGCAACATTTAGAGAAAGCTATGAGTGTTATATCTGATATTTTTCCTCCAGCTTCTATTACATCTGAGTTGACTAAACTTTCAATGCTTTCCTACGGGTCTGCAATTCCACTTGTGTATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAGTTTCCTGTGCATTCATTAGGACTCCCATCTCTTCTGTCAGATCCCAGTGCAAAGACACCAGAAGAGGCATTAGTACATATATTTAGTGAAGCTAGAAGAACAACACCATCGATTCTCTATTTACCACAGTTTGATGTTTGGTGGGAAACTTCTCATGAGCAGCTCAGGGCTGTTCTCCTGACTTTGCTGGAAGAATTACCATCTGATCTGCCTATCTTACTGCTTGGTACATCCTCAGTTGAACCCGCTGAAGTTGAGGAAGTGCCTACTTCAGTTTTCCCTCACCGCACAATTTATCAAGTGAATATGCCATGTGCCAAAGATAGGACTTTGTTTTTCAATCTTTTGATAGAAGCTGTTATGTCAATATTGTTGGAGGGAATCAACAAGAAGTCACAAGATACAGGATACCTCCCTGAACTTCCTAAGGCACCAAAATTGGCTACTGGTCCAAAAGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGCAGGTTACGAATGTGCCTTAGAGATATCTGCAACCGGATACTGTATGACAAAAGATTTAATGCCTTCCATTATCCAGTGTCAGACGAAGATGCACCAAATTACCGGTCAATTATACAGAACCCAATAGACATGGCTACCATCCTGCAGCATGTTGATAATGGCCAATATATTACATGTGCTGCGTTCATGCAGGATATCAATCTTATTGTATCCAATGCAAAGGCCTACAATGGAGAGGATTACAACGGTGCTAGGATTGTCAGTAGAGCTTGTGAGCTCCGTGATGCGGTGCATGGAATGCTCTCACAAATGGATCCAGCACTGGTTGCTTATTGTGACAAGATTGCTAGCCAAGGTGGCCCAGTTCAATTGTCTGATGAATTAGAGGATTCAACATTCCCTGCATCTCCTGTTGTGCAGCTGGGTACTGGTATTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAACGTGGATAAGAGTTATGAGGCATTGAAGCGAACTAAGAAGATCACCGAAATGCATACAGAAGAAAAGTCGCAAGATTCTGTACCGCCAAAGTCTTCCCAGGAGCATCAACCTAATGACACTAATGCTAAAAGGCTTGAACCTATGTCAATTGATGGAAACTTGCATGGAACTTGTACAAATAACCTTGCTGATGCCAACAGTCCCCAGGATGTCACAGTGCTAGATGGTGAATTTTTAAGAGAAGTGGAGTCTGTCAAGCAGCTTTTTGTGAAGCGTAGTGAAAATTTCAGCATTCCACAACTTGAGAGGCTTTACACGAGAATTATGAAGGGTGTGTTTGAAACAAAAAATAAAGGAGTGAATGGGGATCTTAAGTCTTCGGTTTTGAAGTTTTTGTTGAATTTTGTAGAGGATGATGCAAATTTCTAA 3597 0.4348 MYPKRSGQDGPDLRQVRSSDRIKTRPSIYGRPYLFYNQNLRRTRKNKNKTRTAASQIAKMLRPGNRKQQDSNANSGSANLRRSTRKRRLNVNLEDFTDSSGAEDEDLMRPAYPSLRNRIKNRVKQDGLMSSKRKRAADTKPTPRREGLRPRRSKGAVIERLISESDDEQDLSEEKVDQDETENGNDAEENDADDGQNEIEGDAEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEERKARPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAISWGRGGNRSGPPWLFGGLDTHGTTAFGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPNELKKELAASCVGYCGADLKALCTEAAIHAFRQKYPQVYTSDDKFVIDVDSVKVEKTHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQQHLEKAMSVISDIFPPASITSELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFSEARRTTPSILYLPQFDVWWETSHEQLRAVLLTLLEELPSDLPILLLGTSSVEPAEVEEVPTSVFPHRTIYQVNMPCAKDRTLFFNLLIEAVMSILLEGINKKSQDTGYLPELPKAPKLATGPKVSELKAKVEAEQHALRRLRMCLRDICNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPIDMATILQHVDNGQYITCAAFMQDINLIVSNAKAYNGEDYNGARIVSRACELRDAVHGMLSQMDPALVAYCDKIASQGGPVQLSDELEDSTFPASPVVQLGTGIRMSARLRHVQPEVNVDKSYEALKRTKKITEMHTEEKSQDSVPPKSSQEHQPNDTNAKRLEPMSIDGNLHGTCTNNLADANSPQDVTVLDGEFLREVESVKQLFVKRSENFSIPQLERLYTRIMKGVFETKNKGVNGDLKSSVLKFLLNFVEDDANF 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02260 1198 SMART bromo_6 896 1003 IPR001487 GO:0005515
Viun11g02260 1198 ProSitePatterns AAA-protein family signature. 521 539 IPR003960 GO:0005524|GO:0016887
Viun11g02260 1198 Pfam AAA+ lid domain 578 615 IPR041569 -
Viun11g02260 1198 MobiDBLite consensus disorder prediction 263 290 - -
Viun11g02260 1198 Gene3D - 552 637 - -
Viun11g02260 1198 MobiDBLite consensus disorder prediction 166 223 - -
Viun11g02260 1198 MobiDBLite consensus disorder prediction 119 165 - -
Viun11g02260 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 913 IPR027417 -
Viun11g02260 1198 MobiDBLite consensus disorder prediction 1072 1109 - -
Viun11g02260 1198 Pfam ATPase family associated with various cellular activities (AAA) 416 551 IPR003959 GO:0005524|GO:0016887
Viun11g02260 1198 SUPERFAMILY Bromodomain 894 1008 IPR036427 GO:0005515
Viun11g02260 1198 MobiDBLite consensus disorder prediction 45 236 - -
Viun11g02260 1198 ProSiteProfiles Bromodomain profile. 919 981 IPR001487 GO:0005515
Viun11g02260 1198 Gene3D - 888 1016 IPR036427 GO:0005515
Viun11g02260 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 641 IPR027417 -
Viun11g02260 1198 PRINTS Bromodomain signature 928 944 IPR001487 GO:0005515
Viun11g02260 1198 PRINTS Bromodomain signature 962 981 IPR001487 GO:0005515
Viun11g02260 1198 PRINTS Bromodomain signature 944 962 IPR001487 GO:0005515
Viun11g02260 1198 CDD Bromo_AAA 896 1006 - -
Viun11g02260 1198 PANTHER AAA DOMAIN-CONTAINING 1074 1177 IPR045199 -
Viun11g02260 1198 FunFam ATPase family AAA domain-containing protein 888 1016 - -
Viun11g02260 1198 Gene3D - 689 818 IPR027417 -
Viun11g02260 1198 MobiDBLite consensus disorder prediction 65 80 - -
Viun11g02260 1198 Pfam Bromodomain 906 977 IPR001487 GO:0005515
Viun11g02260 1198 FunFam ATPase family, AAA domain-containing 2 374 557 - -
Viun11g02260 1198 Gene3D - 374 644 IPR027417 -
Viun11g02260 1198 SMART AAA_5 412 553 IPR003593 GO:0016887
Viun11g02260 1198 MobiDBLite consensus disorder prediction 1 25 - -
Viun11g02260 1198 FunFam ATPase family AAA domain-containing protein 2B 552 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02260 Viun-Chr11 37256626 37264489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02260 362 616 Calmodulin-binding Proteins AT3G56690 36.680 6.16e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02260 K22531 - gmx:100787765 2118.2