Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02254 ATGGGAAGCTGCATTTCAACGCAAGGCGTGAGGACACGCAAGAGGGCCAAGCACCCGAGCAAGCCCACGTCGCCGCGAACGCACGGACACGGCCACGGGAACAACGGGACCGAACAGACCACGCGGAGGTCCAGCGTGGTGGCGCCTAGGTCCAGCGTGACGGCGCGTCCGCTGAATGTGGTGGCGAACCCGAGTCCGGGGAACATATTCGATAAATATCAGTTCGGGAAGGAGCTGGGTCGCGGCGAGTTCGGCGTGACTCACCGCGTGGTGGATTTAGTGAGTGGCGAAGCGTTTGCGTGCAAGAAGATAGCGAAGACGAAGCTGAGAACGGAGATTGACGTGGAAGATGTGAGAAGAGAGGTTCAGATCATGAGGCACTTGCCTCGGCACCCCAACATTGTGGCCTTCAAGGAGGCTTATGAGGACAGAGACGCCGTTTACCTCGTCATGGAACTCTGTGAAGGTGGCGAACTCTTTGATAGGATTGTTGCTAAGGGCCATTACACCGAGCGTGCTGCTGCTAATGTTGCCAAAACCATACTTGAAGTCTGCAAGGTGTGTCATGAGCACGGAGTAATACACAGGGACTTGAAACCTGAAAATTTCTTATTTGCAGATACAAACGAGGCTGCAGCATTGAAATCTATTGATTTTGGCCTTTCTACCTTCTATGTGCCAGGTGAACGATTCAGTGAAATTGTTGGAAGCCCTTATTACATGGCTCCAGAGGTTTTAAGACGAAACTATGGACAAGAAATTGATGTCTGGAGCACTGGTGTAATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAAACCGAGGAAGGGATTGCACAAGCTATCATTAAGGGTAAAGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCCGATGAAGCAAAACATCTAGTTAAGCGCATGCTTGATCCAAGTCCATTCACACGGATAACAGTTCAAGAAGTTCTTGATCATCCCTGGATACAAAACAGAGAGCATGGTCGAACTATTTCTCTTGGAGACCAAGTGAGAATGAGGATCAAGCAATTCTCCTTGATGAACAGATTCAAAAGAAAGGTTCTTAGAGTGGTAGCGGATAACTTGTCAGATGAACAAATTGAAGCGTTTAAGAAAATGTTTGATATGATGGATAAGGACAAAAATGGAAGCTTGTCATTTGAAGAACTCAAAGATGGCCTTTCAATGATTGGACACGCCATTCCTGATCCTGAAGTTCAAATGTTACTGGAAGCTGCGGATGCTGATGGAAACGGCACCCTTAACTATGAGGAGTTCATCACGATGAGTGTTCACCTCAAAAAGATCGAAGGTGATGAGCATCTCACTCAAGCATTCCGTTACTTTGACAAGAACCAGACCGGATATGTTGAGTTCGAGGAGTTGAAGGATGCCTTATCAGATGATGAGTCGGAAGTGATGAACGACCAAGTGATCAAAGACATTATAAATGATGTTGACTTGGATAAGGATGGTAGAATCAGTTTTGCAGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCCTCTCGGCAGTATTCAAGAGCATTGCTGAATGCATTAAGCTTCAAGATGTTTAAAGACACACCTACCAAAGCGTAA 1638 0.464 MGSCISTQGVRTRKRAKHPSKPTSPRTHGHGHGNNGTEQTTRRSSVVAPRSSVTARPLNVVANPSPGNIFDKYQFGKELGRGEFGVTHRVVDLVSGEAFACKKIAKTKLRTEIDVEDVRREVQIMRHLPRHPNIVAFKEAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKVCHEHGVIHRDLKPENFLFADTNEAAALKSIDFGLSTFYVPGERFSEIVGSPYYMAPEVLRRNYGQEIDVWSTGVILYILLCGVPPFWAETEEGIAQAIIKGKVDFTRDPWPKVSDEAKHLVKRMLDPSPFTRITVQEVLDHPWIQNREHGRTISLGDQVRMRIKQFSLMNRFKRKVLRVVADNLSDEQIEAFKKMFDMMDKDKNGSLSFEELKDGLSMIGHAIPDPEVQMLLEAADADGNGTLNYEEFITMSVHLKKIEGDEHLTQAFRYFDKNQTGYVEFEELKDALSDDESEVMNDQVIKDIINDVDLDKDGRISFAEFKAMMKTGGDWKMASRQYSRALLNALSFKMFKDTPTKA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02254 545 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Viun11g02254 545 MobiDBLite consensus disorder prediction 11 25 - -
Viun11g02254 545 ProSitePatterns EF-hand calcium-binding domain. 423 435 IPR018247 -
Viun11g02254 545 ProSiteProfiles EF-hand calcium-binding domain profile. 410 445 IPR002048 GO:0005509
Viun11g02254 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 67 505 - -
Viun11g02254 545 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02254 545 Gene3D Transferase(Phosphotransferase) domain 1 159 339 - -
Viun11g02254 545 CDD STKc_CAMK 72 330 - -
Viun11g02254 545 SMART efh_1 414 442 IPR002048 GO:0005509
Viun11g02254 545 SMART efh_1 450 478 IPR002048 GO:0005509
Viun11g02254 545 SMART efh_1 378 406 IPR002048 GO:0005509
Viun11g02254 545 SMART efh_1 487 515 IPR002048 GO:0005509
Viun11g02254 545 ProSiteProfiles EF-hand calcium-binding domain profile. 446 481 IPR002048 GO:0005509
Viun11g02254 545 SUPERFAMILY Protein kinase-like (PK-like) 61 339 IPR011009 -
Viun11g02254 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Viun11g02254 545 ProSiteProfiles Protein kinase domain profile. 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02254 545 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Viun11g02254 545 ProSiteProfiles EF-hand calcium-binding domain profile. 483 518 IPR002048 GO:0005509
Viun11g02254 545 SMART serkin_6 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02254 545 Pfam EF-hand domain pair 377 438 IPR002048 GO:0005509
Viun11g02254 545 Pfam EF-hand domain pair 449 513 IPR002048 GO:0005509
Viun11g02254 545 MobiDBLite consensus disorder prediction 27 52 - -
Viun11g02254 545 ProSitePatterns EF-hand calcium-binding domain. 459 471 IPR018247 -
Viun11g02254 545 Gene3D Phosphorylase Kinase; domain 1 75 158 - -
Viun11g02254 545 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Viun11g02254 545 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Viun11g02254 545 MobiDBLite consensus disorder prediction 1 52 - -
Viun11g02254 545 SUPERFAMILY EF-hand 368 518 IPR011992 -
Viun11g02254 545 FunFam Calcium-dependent protein kinase 1 75 158 - -
Viun11g02254 545 CDD EFh 379 438 IPR002048 GO:0005509
Viun11g02254 545 Gene3D - 340 515 - -
Viun11g02254 545 FunFam Calcium-dependent protein kinase 7 340 516 - -
Viun11g02254 545 FunFam calcium-dependent protein kinase 13 159 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02254 Viun-Chr11 37222419 37225573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02254 1 540 EF-hand Containing Proteins AT2G31500 65.625 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun11g02254 Pkinase 2.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02254 K13412 - gmx:100818929 952.199