Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02253 ATGGAGTCGGAGGATGACATGCACGACGCCAACGACATCGATTCCCTCGACGACGATTTCTACAGCGGCGAAACCGAGGATGCGCCCTTGGATTACTACAGCGATTACGACGATGAGGCCGATGATTACTTCGAAGACGCTGACAGGATTGAGTCTCGTCGCCCTGAGCAAAATTTCACCATTTTGAAGGAATCTGACATCAAACAAAGACAGGAAGAAGATGTCACTAGAGTAGCAACTGTTCTTTCCATATCAAGAATTTTTGCAAGCATACTACTTCGTTACTACAATTGGAGTGTCAGTAGAGTGCATGATGCATGGTTTGCTGATGAAGAACAAGTCAGAAAAACAGTTGGTTTGTTGGAGAAGCCAATTGTCCAGCTTGATAATAATACTAAAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGGGCTAGAATTGAAATGGCTTCCTGTGGTCATCCCTACTGTATCTCATGCTGGGAAGGCTATATCAGCACATCCATTAGTGATGGTCCCGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAGTCTTTTAAAATCTGATGAAGATAAGCAGAAATATGCACGTTATCTTCTTAGATCATACATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCTGTCACTTTTGATGCTGGTAGTGGTGGGAATTACGATGTCTCTTGCCTCTGTTCATATAGTTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCGGTAGACTGTGGGACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAATTGGATACTTGCTAATTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCGCCCTGTAAATATGAGTTTTGCTGGCTGTGCCTTGGTGTATGGTCAGACCACGGTGAAAGAACTGGGGGTTTCTATGCTTGCAATCGCTATGAAACAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCATTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCGGATCTGCAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTTATTACTGAGGCCTGGCTACAAATAATCGAGTGTAGAAGAGTACTGAAGTGGACATACGCATATGGGTTCTACTTACCCGAGCATGAGCATGCGAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGGCTGGAGAGACTTCATCAATGTGCAGAAAAGGAACTTCAGCCATTCCTATGTGCTGATGAGCCATCTAGAGAGTTCAATGACTTTCGTACTAAACTAGCTGGATTGACTAGTGTAACTAGAAACTACTTTGAGAATTTAGTAAGGGCGTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTTCCTTCAGCAGAGCAACGAGCTCAAAAAATGCTGCTGGGAGCAGTAAGAGTAGATCTGGAAGAGTAAAGGGAACTTTTCGAACCAGCATGTCCAGCAGAATGAATGATGATAGTCATTGGTGTTGCGAGCATTGTACCTATGCAAATGTGAAATCTGCCACCACATGCCAGATGTGCTATCAACAGCGTCGATGA 1770 0.4339 MESEDDMHDANDIDSLDDDFYSGETEDAPLDYYSDYDDEADDYFEDADRIESRRPEQNFTILKESDIKQRQEEDVTRVATVLSISRIFASILLRYYNWSVSRVHDAWFADEEQVRKTVGLLEKPIVQLDNNTKELTCGICFENYPRARIEMASCGHPYCISCWEGYISTSISDGPGCLMLRCPDPTCGAAVGQDMISLLKSDEDKQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGVWSDHGERTGGFYACNRYETAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLCADEPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGASFSRATSSKNAAGSSKSRSGRVKGTFRTSMSSRMNDDSHWCCEHCTYANVKSATTCQMCYQQRR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02253 589 FunFam RBR-type E3 ubiquitin transferase 131 220 - -
Viun11g02253 589 ProSiteProfiles TRIAD supradomain profile. 133 347 IPR044066 -
Viun11g02253 589 Pfam IBR domain, a half RING-finger domain 206 269 IPR002867 GO:0008270
Viun11g02253 589 Pfam IBR domain, a half RING-finger domain 286 333 IPR002867 GO:0008270
Viun11g02253 589 SMART ibrneu5 273 343 IPR002867 GO:0008270
Viun11g02253 589 SMART ibrneu5 206 269 IPR002867 GO:0008270
Viun11g02253 589 CDD RING-HC_ARI6-like 134 195 - -
Viun11g02253 589 Gene3D - 265 520 - -
Viun11g02253 589 CDD Rcat_RBR_ARI7-like 292 346 - -
Viun11g02253 589 SUPERFAMILY RING/U-box 207 276 - -
Viun11g02253 589 Pfam Ariadne domain 356 517 IPR045840 -
Viun11g02253 589 SUPERFAMILY RING/U-box 288 336 - -
Viun11g02253 589 CDD BRcat_RBR_ANKIB1 213 278 - -
Viun11g02253 589 MobiDBLite consensus disorder prediction 528 557 - -
Viun11g02253 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 216 IPR013083 -
Viun11g02253 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 435 IPR031127 GO:0004842|GO:0016567
Viun11g02253 589 SUPERFAMILY RING/U-box 131 218 - -
Viun11g02253 589 ProSitePatterns Zinc finger RanBP2-type signature. 565 584 IPR001876 -
Viun11g02253 589 FunFam RBR-type E3 ubiquitin transferase 270 520 - -
Viun11g02253 589 ProSiteProfiles Zinc finger RING-type profile. 137 181 IPR001841 -
Viun11g02253 589 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02253 Viun-Chr11 37213247 37220956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02253 17 588 ARIADNE family AT1G65430 69.297 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02253 K11968 - gmx:100784195 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03672 5 45937355 45945333 Viun11g02253 11 37213247 37220956 PCT