Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02233 ATGTCCACCACCACCGCATCCGGCGACCGAGCTCCATCTTTCCACTTTGATACGCCGACGCTGGACCGGGAGTCAGCGGCGCTTCTCCACTCGATTTCCGAGCACGGTGGGTACGCGTACGTGAGCATGGCAGCGCTGGCGGCCGGGGGCGACATTCGCGCGGCGGAGGCGGCGTGTGAGATGGCGTGGGAGCAGCTGCACTCCGGGCCTTGGCACTCGGTGCTGCCGGTGTGGCGCGACGCGTACTCCATGGCTTGCCTCTACGTGGCTCGACACCACTCTGGCAACGGCGAGTTTAGGGAGGCGCTTAGGGTTTTAGATTTGGGAATCATCATGGGAGGGGCGCTCCTCCGCAAGGATTTGGACTCCGCCGTCGCGAAAGTGTCGGAACAATCTCGAAGGAGCGTTAGGGTTTCTGAATTGGGGGACTCGGGACGCCGGTTGGTCGATCGGGACTTTAATGTGACAGAGGTGCTCCAACTTTTACCAATGAAGTCTCTTTCTTCTACGCTTGTGATCAAGAAATCAGCGTTGTCGTTGGATAAATTCCTAAAGGATCATTACCTGTCTCGCTCTCCGGTTATTATCAGCGATTGTATGGCTCACTGGCCAGCCAGCGCGAAATGGAATGATGAAGATTACTTGTTGAGAGTTGCCGGTGACCGCACAGTTCCGGTTGAGGTTGGAAAAAACTATTTATGTGCTGAGTGGAAGCAAGAACTGATTACTTTTTCAGAATTTATTCAGCGGATAAAGTCTGGTGCTTGTTCTCCTGGTGGTCCTACTTATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTGCGGAAAGATATTTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGCTACGATCTCTCAATGCTTGGTTTGGTCCAGCAGGAACAGTAACACCATTACACCATGATCCGCATCATAACATACTAGCTCAGGTTGTTGGAAAAAAATACATTAGGCTTTACTCGTCATCTTTGTCTGAGGAACTTTCCCCCCACTCTGGTACCATGCTCAGCAATTCCAGCCAGGTTGATTTAGATGACCTGGATGAAAGGAAGTTCCCCAAGGTGCAAGAGTTGGAATTTGTAGACTGTATTTTGGAGGAAGGCGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTTCGGTCTTTGACTACAAGTTTTTCAGTTAGCTTTTGGTGGAGTGAGGGTGACACTTCGGATGCATCCTAA 1242 0.5064 MSTTTASGDRAPSFHFDTPTLDRESAALLHSISEHGGYAYVSMAALAAGGDIRAAEAACEMAWEQLHSGPWHSVLPVWRDAYSMACLYVARHHSGNGEFREALRVLDLGIIMGGALLRKDLDSAVAKVSEQSRRSVRVSELGDSGRRLVDRDFNVTEVLQLLPMKSLSSTLVIKKSALSLDKFLKDHYLSRSPVIISDCMAHWPASAKWNDEDYLLRVAGDRTVPVEVGKNYLCAEWKQELITFSEFIQRIKSGACSPGGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSLSEELSPHSGTMLSNSSQVDLDDLDERKFPKVQELEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSEGDTSDAS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02233 413 Gene3D Cupin 172 405 - -
Viun11g02233 413 FunFam lysine-specific demethylase JMJ30 171 404 - -
Viun11g02233 413 Pfam Cupin-like domain 182 408 IPR041667 -
Viun11g02233 413 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 125 408 - -
Viun11g02233 413 SUPERFAMILY Clavaminate synthase-like 177 405 - -
Viun11g02233 413 ProSiteProfiles JmjC domain profile. 271 413 IPR003347 -
Viun11g02233 413 SMART cupin_9 262 412 IPR003347 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02233 182 404 Acyl Lipid Metabolism Gene Families AT3G45880 23.571 2.05e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun11g02233 Cupin_8 2.9e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02233 K24444 - gmx:100813075 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02233 11 37069584 37074428 Viun11g02233 11 37069584 37074428 ECH