Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02225 ATGGAGTCAGATCTTCAGCAGCACCCTCCCATGTTTTTGGATCACCACCAGCAGCCGACGAATTCAGGGTTGACACGGTATCGATCGGCTCCGAGTTCTTATTTTTCGAGCATCATCGACCGTGAGTTCTACGAGCACGTTTTCAATCGACCCTCGAGCCCCGAAACCGAACGAATGTTGACACGCTTTGTGAATAGTCTTGGTGGGGGCGATGCTGATGCTGCTGATGCTGATGCAGAGGATGCACTTCCTACTCAAAATCCCTCAACCGTTGTTGCTGTTAAAGAAGAGGTTAATCAACAACCTAAGGATATGCCTTTACCACCCATCAATAATGAGTCCCTTGTTCTCCAACAACATCAACAACAGCAAAGTAATATTAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTACCAGAACACTGGACGACCACCTTTGCCAAACCAGATGGAGACTGGTCGTAGAACTGCTTCAAATCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAACTGGTTATGCTGCTGTAAGAGGCATGGGGGGGACTATGGGAGCTGCTAATAACAGCACTGAGGAAGCAAACTTTTCTCCCGTAACAAGGATGAAGAATGCCCCAAACTACTCTTCGGGATTAATGTCATCAAGGGCTGAAATTGGAAACAAAAACACTACACAGAATAATCCAGAAAACGAAGGGTTTGCTGAAAGCCAGGGCAATGAATTCATCCCTGGTTTCCCCGTTGGTTCGTGGGATGATTCTGCAATCATGTCTGATAATATGACAGGTCTGAAGAGATACAGAGAAGAAGATGTAAAACCATTTTCTGGTTTAAACGTACCTGAAACTCAGAACGAAGCAGGAGGCCAACCTTCCACTGGTTTGGCTCATCAATTGAGTTTGCCAAATACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTACAGCTCTCAGATTCTGTTCCTTGCAAAATCCGTGCCAAGCGAGGTTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGAGAATGAGGAAACTGCAAGATCTCGTCCCCAACATGGATAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTATTGAGTACATTAAAGACCTTCAAAAGCAAGTTGAGACTCTTTCAGAAAATCGCGAGAAGTGTACGTGTTCAAACAATCAGCAGCAGCAGCAGCAGCAGCAGCAATAA 1251 0.446 MESDLQQHPPMFLDHHQQPTNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVNSLGGGDADAADADAEDALPTQNPSTVVAVKEEVNQQPKDMPLPPINNESLVLQQHQQQQSNINNYGSSAPQNFYQNTGRPPLPNQMETGRRTASNLIRHGSSPAGLFSNINIETGYAAVRGMGGTMGAANNSTEEANFSPVTRMKNAPNYSSGLMSSRAEIGNKNTTQNNPENEGFAESQGNEFIPGFPVGSWDDSAIMSDNMTGLKRYREEDVKPFSGLNVPETQNEAGGQPSTGLAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAIEYIKDLQKQVETLSENREKCTCSNNQQQQQQQQQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02225 416 Coils Coil 378 405 - -
Viun11g02225 416 SMART finulus 344 394 IPR011598 GO:0046983
Viun11g02225 416 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 404 IPR036638 GO:0046983
Viun11g02225 416 Gene3D - 340 403 IPR036638 GO:0046983
Viun11g02225 416 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 412 - -
Viun11g02225 416 FunFam Transcription factor bHLH130 family 339 408 - -
Viun11g02225 416 MobiDBLite consensus disorder prediction 1 23 - -
Viun11g02225 416 Pfam Helix-loop-helix DNA-binding domain 343 389 IPR011598 GO:0046983
Viun11g02225 416 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 388 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02225 Viun-Chr11 37023385 37027464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02225 1 406 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 42.092 4.93e-83 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun11g02225 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02225 - - gmx:100803833 643.269