LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g02217	ATGGATTCAGCGACAACAGCTCCTCCCACGTTGCAGGAGCTGGAGCTCGACAACCTCAAAGCTCTCAAAGTCCTAGGAAAAGGTGCCATGGGAACCGTCTTCCTCGTCCACGACACCACCACCAACAACGCCCCCCTCGCCTTGAAAGTCGTCGACAAAACCTGCGTCCGCGCAAAACTCGACGCCGAACGCCGCGCGCGTTGGGAAATCCAAGTCCTCTCAACCCTCTCCCACCCCTTCCTCCCTACCCTCCTCGGAACATTCGATTCCCCACAGTTCTTAGCGTGGGCCATACCCTACTGCCCCGGCGGCGACCTCAACGTCCTCCGCTACCGCCAAACCGACCGCACTTTCTCCCCCACCGTCATCCGCTTCTACGTGGCGGAAATCATCTGCGCGCTCCACCACCTCCATTCCATGGGCATAGCATACCGTGACCTCAAACCAGAAAATGTCCTCATCCAAAACAACGGTCACGTCACCCTCACCGATTTCGACCTCTCCCGCAAACTCACCCTCAAACCTAAACCCCATCTTCCTTCAATCCCCGTCCCCAATCCCAAAGTCAAAGAACCCCGCCGCAAACACCGTCGCAACTTCTCCCGCTGGATCCCCCTCCCTCCCCTCGACGGGAACCGAAGGAAGGCCACCACCAACGCCCTCAAGAAGGCCAAGTCCGCGCGAGTCAGCCCCGTGAGTAGACGAAAACTGAGTTTCTCCAACGGCGAGCGCTCCAACTCGTTCGTCGGAACCGAGGAGTACGTCTCACCGGAGGTCGTTCGAGGCGACGGCCACGAGTTCGCCGTTGATTGGTGGTCCCTCGGAATACTCATCTACGAAATGCTCTACGGTACGACTCCGTTCAAAGGCAAGAATCGCAAGGACACGTTCCGCAACGTCCTCACCAAGGCGCCGGAGTTCGTCGGGAAGAGAACCGCGCTCACGGACCTCATCGAGAAGCTCCTGACGAAGGATCCGACGAGGCGGTTGGGATACACGCACGGCGCTGCGGAGATCAAGGAGCATGAGTTCTTCCGAGGGGTGAAATGGGACCATTTAATTGAGGTTGTGCGGCCGCCGTTCATTCCGTCGCGGGACGACGGCTCCGCGGAGTCGTTGGAGAAGCTTTCCGCCGGGAATTCTGGCGTGGATATTAGGGATTACTTTCAGAATCTTAGATCGGTGCCATCTTCACCGTCAGCGTCAGCCTCCCCATCATCGCCGCGGTGGCGGTTTAAGAAAAATGTTTCTCTAACGGAATTCTAA	1266	0.5798	MDSATTAPPTLQELELDNLKALKVLGKGAMGTVFLVHDTTTNNAPLALKVVDKTCVRAKLDAERRARWEIQVLSTLSHPFLPTLLGTFDSPQFLAWAIPYCPGGDLNVLRYRQTDRTFSPTVIRFYVAEIICALHHLHSMGIAYRDLKPENVLIQNNGHVTLTDFDLSRKLTLKPKPHLPSIPVPNPKVKEPRRKHRRNFSRWIPLPPLDGNRRKATTNALKKAKSARVSPVSRRKLSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWSLGILIYEMLYGTTPFKGKNRKDTFRNVLTKAPEFVGKRTALTDLIEKLLTKDPTRRLGYTHGAAEIKEHEFFRGVKWDHLIEVVRPPFIPSRDDGSAESLEKLSAGNSGVDIRDYFQNLRSVPSSPSASASPSSPRWRFKKNVSLTEF	421

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun11g02217	421	PANTHER	FLIPPASE KINASE 1-RELATED	12	366	-	-
Viun11g02217	421	MobiDBLite	consensus disorder prediction	176	196	-	-
Viun11g02217	421	ProSitePatterns	Protein kinases ATP-binding region signature.	25	49	IPR017441	GO:0005524
Viun11g02217	421	SUPERFAMILY	Protein kinase-like (PK-like)	16	408	IPR011009	-
Viun11g02217	421	FunFam	Serine/threonine-protein kinase UCNL	19	104	-	-
Viun11g02217	421	FunFam	Serine/threonine-protein kinase OXI1	105	173	-	-
Viun11g02217	421	FunFam	Serine/threonine-protein kinase OXI1	243	364	-	-
Viun11g02217	421	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	142	154	IPR008271	GO:0004672\|GO:0006468
Viun11g02217	421	ProSiteProfiles	Protein kinase domain profile.	19	345	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Viun11g02217	421	Pfam	Protein kinase domain	21	175	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g02217	Viun-Chr11	36965188	36966817	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g02217	14	421	AGC Kinase Gene Family	AT3G20830	59.712	3.16e-163	463

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Viun11g02217		Pkinase	7.3e-33	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g02217	-		-	gmx:100785281	662.144

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun5g03622	5	45582672	45585186	Viun11g02217	11	36965188	36966817	PCT

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