Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02216 ATGAACAACAACTGGCTTTCTTTCCCTCTTTCTCCCACTCATTCTTCCTTACCATCATCCCATGATCTTCAAGCAACTCAGTACCATCAATTTTCCCTTGGGCTGGTGAACGAAACCATGGAAAACCCTTTCCAAAATCATGATTGGAATCTGATTAACACTCATAGCAGCAACGAGGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGAGCTTGCTGCTTTAAACGAAATTCAGTCAAATGATTCAGATTATCTGTTCACAAACAACAGTTTGGTGCCTCTGCAGAACCCTGTGGTGGACACACCGAGCAATGAGTATCAAGAAAATGCTAACAGTAACTTACAATCGCTGACATTATCCATGGGAAGTGGTAAGGATTCTACATGTGAAACCAGTGGTGAAAATAGTACAAACACTGTTGAAGCTGCACCTAGAAGAACTTTGGATACTTTCGGTCAGAGAACATCCATATATCGTGGAGTAACGCGACATAGGTGGACTGGAAGATATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGACGCCAAGTTTATTTGGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCAGCACTGAAGTACTGGGGAACATCCACCACTACCAACTTTCCAATTAGCAACTACGAGAAGGAATTGGATGAAATGAAACACATGACCAGACAAGAATTTGTTGCCGCTATTAGAAGGAAAAGTAGTGGTTTCTCTAGAGGTGCATCAATGTATCGCGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCTTACGACATAGCAGCGATAAAGTTCAGAGGTCTGAACGCCGTCACAAACTTTGACATGAGCCGTTATGACGTGAAAGCGATTCTCGAAAGCAACACTCTCCCGATAGGAGGAGGCGCTGCAAAACGTCTGAAAGAAGCTCAAGCTCTAGAATCTTCTAGAAAACGTGAAGAGATGATTGCACTGGGCTCATCCACCTTCCAATATGGAACCTCAAGCTCTTCTAGGCTACACGCTTACCCTCTAATGCAGCACCACCAGTTCGAGCAACCTCAGCCTCTGCTAACCTTGCAAAACCATGACATGAGCTCTCACTTCTCTCACCAAGACCCTTTACACCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGTGTTTCTTCTTACCTCCACAATAATCCTCAGTTCTACGGCGGCTACCTCCAGAACCACCCTGCATTGCTTCAGGGAATGATGAACATGGGGTCTTCTTCTTCTTCTTCATCTGTGTTGGAGAATAACAACAACAATAATGGCAATGTTGGTGGGTTTGCAGGGAGTGGTTTTGGTATGGCTTCGAATGCAACGTCGGGTAACGCGGTGGGCGCGGCGGAGGAACTTGGCTTGGTGAAGGTTGACTATGACATGCCAGCCGGAGGTTACGGCGGTTGGTCGGCGGCGGCGGCGGAATCCATGCAGACGTCAAATGGTGGGGTGTTCACAATGTGGAATGAGTGA 1641 0.4589 MNNNWLSFPLSPTHSSLPSSHDLQATQYHQFSLGLVNETMENPFQNHDWNLINTHSSNEVPKVADFLGVSKSENQSELAALNEIQSNDSDYLFTNNSLVPLQNPVVDTPSNEYQENANSNLQSLTLSMGSGKDSTCETSGENSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTSSSSRLHAYPLMQHHQFEQPQPLLTLQNHDMSSHFSHQDPLHQGYIQTQLQLHQQSGVSSYLHNNPQFYGGYLQNHPALLQGMMNMGSSSSSSSVLENNNNNNGNVGGFAGSGFGMASNATSGNAVGAAEELGLVKVDYDMPAGGYGGWSAAAAESMQTSNGGVFTMWNE 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02216 546 FunFam AP2-like ethylene-responsive transcription factor ANT 163 232 - -
Viun11g02216 546 SUPERFAMILY DNA-binding domain 265 326 IPR016177 GO:0003677
Viun11g02216 546 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 61 416 - -
Viun11g02216 546 SMART rav1_2 266 330 IPR001471 GO:0003700|GO:0006355
Viun11g02216 546 SMART rav1_2 164 236 IPR001471 GO:0003700|GO:0006355
Viun11g02216 546 CDD AP2 265 326 IPR001471 GO:0003700|GO:0006355
Viun11g02216 546 ProSiteProfiles AP2/ERF domain profile. 266 324 IPR001471 GO:0003700|GO:0006355
Viun11g02216 546 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Viun11g02216 546 PRINTS Ethylene responsive element binding protein signature 306 326 IPR001471 GO:0003700|GO:0006355
Viun11g02216 546 CDD AP2 163 232 IPR001471 GO:0003700|GO:0006355
Viun11g02216 546 FunFam AP2-like ethylene-responsive transcription factor 265 326 - -
Viun11g02216 546 ProSiteProfiles AP2/ERF domain profile. 164 230 IPR001471 GO:0003700|GO:0006355
Viun11g02216 546 Pfam AP2 domain 267 316 IPR001471 GO:0003700|GO:0006355
Viun11g02216 546 Pfam AP2 domain 164 222 IPR001471 GO:0003700|GO:0006355
Viun11g02216 546 SUPERFAMILY DNA-binding domain 163 232 IPR016177 GO:0003677
Viun11g02216 546 Gene3D AP2/ERF domain 266 326 IPR036955 GO:0003700|GO:0006355
Viun11g02216 546 Gene3D AP2/ERF domain 164 232 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02216 Viun-Chr11 36940453 36943788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02216 3 546 AP2-EREBP Transcription Factor Family AT1G51190 63.423 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun11g02216 AP2 9.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02216 K09285 - gmx:100788471 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02216 11 36940453 36943788 Viun11g02216 11 36940453 36943788 ECH