Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02211 ATGACCAATTCCTACAGATCCAATGACCTTAACTTTTGGTTGGACCTCAATTCACCATGTCTTCTCTCTTCTCCTTCTTCATCATCTCCTCCCATCACTCCATCATTATATTTTCCTTCCAATTATCAAACCTACACAACCTCTCCTCAAACAAAACTCTTTCCTTTCCTTCATCATCAACAACAAGAACAAGAACAAGAAGAAGATGAAGAAGAAGAAGAAGAATATCTTGAATCTTCATTCAGTGGCATGGAAGTGGACAAGAAAAAGAAAGAGCCAAGTACATCATCAAAGTGCTTAGATGAAGAAGATGCTGTGACTGTGGCTTTACACTTAGGGCTTCCAACCACTGCTGCATCTACTGATTTAGCTTCAAGTCTATACTCATCAGAGGTTTCAGACAAAGGAGAAAAAACCAGTGATGCTTCGGGGTTACTACTGTCAGATAGAATTAACAGAGGACAGTATTGGATCCCTACTTCTGCTCAGATTCTGATTGGTCCAACACAGTTCGCATGCCCTCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAGTATAGAAAGGGACCAGAGTCTCTAAGAGGAACACAACCAACAGCTATGTTAAGGCTTCCATGTTATTGCTGTGCTCCAGGATGCAAGAACAACATCGACCATCCGAGAGCAAAACCACTTAAAGATTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAACCTTTGCTGTGAGGGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAACGCTGGTATTGTTCTTGTGGCTCTGATTTCAAGCACAAAAGGTCTCTTAAAGATCATATGAAGGCCTTTGGATATGGACACACGGCTCATGGAAATGACTGCATGAACCTTGACCAAGATGATGATCAAGCAGGTTCTGAAATTGAACAAGAAAATTAA 996 0.4137 MTNSYRSNDLNFWLDLNSPCLLSSPSSSSPPITPSLYFPSNYQTYTTSPQTKLFPFLHHQQQEQEQEEDEEEEEEYLESSFSGMEVDKKKKEPSTSSKCLDEEDAVTVALHLGLPTTAASTDLASSLYSSEVSDKGEKTSDASGLLLSDRINRGQYWIPTSAQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKTFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHMKAFGYGHTAHGNDCMNLDQDDDQAGSEIEQEN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02211 331 Gene3D Classic Zinc Finger 214 303 - -
Viun11g02211 331 FunFam Zinc finger protein WIP2 224 306 - -
Viun11g02211 331 MobiDBLite consensus disorder prediction 65 80 - -
Viun11g02211 331 PANTHER ZINC FINGER PROTEIN WIP2 48 330 IPR043584 GO:0003700|GO:0010468
Viun11g02211 331 Coils Coil 59 79 - -
Viun11g02211 331 MobiDBLite consensus disorder prediction 59 100 - -
Viun11g02211 331 SUPERFAMILY beta-beta-alpha zinc fingers 237 275 IPR036236 -
Viun11g02211 331 MobiDBLite consensus disorder prediction 81 99 - -
Viun11g02211 331 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Viun11g02211 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02211 Viun-Chr11 36886291 36888907 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02211 106 329 C2H2 Transcription Factor Family AT3G57670 64.961 9.32e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun11g02211 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02211 - - gmx:100802239 503.442