Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02210 ATGACCAATTCCTACAGATCCAATGACCTTAACTTTTGGTTGGACCTCAATTCACCATGTCTTCTCTCTTCTCCTTCTTCATCATCTCCTCCCATCACTCCATCATTATATTTTCCTTCCAATTATCAAACCTACACAACCTCTCCTCAAACAAAACTCTTTCCTTTCCTTCATCATCAACAACAAGAACAAGAACAAGAAGAAGATGAAGAAGAAGAAGAAGAATATCTTGAATCTTCATTCAGTGGCATGGAAGTGGACAAGAAAAAGAAAGAGCCAAGTACATCATCAAAGTGCTTAGATGAAGAAGATGCTGTGACTGTGGCTTTACACTTAGGGCTTCCAACCACTGCTGCATCTACTGATTTAGCTTCAAGTCTATACTCATCAGAGGTTTCAGACAAAGGAGAAAAAACCAGTGATGCTTCGGGGTTACTACTGTCAGATAGAATTAACAGAGGACAGTATTGGATCCCTACTTCTGCTCAGATTCTGATTGGTCCAACACAGTTCGCATGCCCTCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGAATTTTCAGATGCATATGTGGGGGCATGGATCTCAGTATAGAAAGGGACCAGAGTCTCTAAGAGGAACACAACCAACAGCTATGTTAAGGCTTCCATGTTATTGCTGTGCTCCAGGATGCAAGAACAACATCGACCATCCGAGAGCAAAACCACTTAAAGATTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAACCTTTGCTGTGAGGGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAACGCTGGTATTGTTCTTGTGGCTCTGATTTCAAGCACAAAAGGTCTCTTAAAGATCATATGAAGGCCTTTGGATATGGACACACGGCTCATGGAAATGACTGCATGAACCTTGACCAAGATGATGATCAAGCAGGTTCTGAAATTGAACAAGAAAATTAA 1005 0.4119 MTNSYRSNDLNFWLDLNSPCLLSSPSSSSPPITPSLYFPSNYQTYTTSPQTKLFPFLHHQQQEQEQEEDEEEEEEYLESSFSGMEVDKKKKEPSTSSKCLDEEDAVTVALHLGLPTTAASTDLASSLYSSEVSDKGEKTSDASGLLLSDRINRGQYWIPTSAQILIGPTQFACPLCFKTFNRYNNMQNFQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKTFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHMKAFGYGHTAHGNDCMNLDQDDDQAGSEIEQEN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02210 334 MobiDBLite consensus disorder prediction 65 80 - -
Viun11g02210 334 PANTHER ZINC FINGER PROTEIN WIP2 48 333 IPR043584 GO:0003700|GO:0010468
Viun11g02210 334 Coils Coil 59 79 - -
Viun11g02210 334 MobiDBLite consensus disorder prediction 59 100 - -
Viun11g02210 334 FunFam Zinc finger protein WIP2 227 309 - -
Viun11g02210 334 MobiDBLite consensus disorder prediction 81 99 - -
Viun11g02210 334 Gene3D Classic Zinc Finger 215 306 - -
Viun11g02210 334 SUPERFAMILY beta-beta-alpha zinc fingers 240 278 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02210 Viun-Chr11 36886283 36888912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02210 106 332 C2H2 Transcription Factor Family AT3G57670 64.202 1.23e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun11g02210 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02210 - - gmx:100802239 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03620 5 45570356 45572673 Viun11g02210 11 36886283 36888912 PCT