Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02189 ATGAGGAAGCCCGAGGTGTCTGCAAAAAACAACACCAACGTTAATAACAAGCTTCGAAAGGGGTTGTGGTCGCCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTCGCCAGAAATGCCGGCCTTCAGAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTCAAACGAGGTGCATTCTCTCCACAAGAAGAGGAACTCATTGTCCACTTGCATTCCCTTCTCGGAAACAGATGGTCTCAAATTGCGGCGCGCTTGCCTGGGAGAACTGACAATGAAATTAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTGAAGAACATGTCATCCAACAACACCTCACCAAATGGAAGCGAGTCCTCGTATGACCCTAACAAAGACCTTAACATGGCAGGGTTTACTACTTCTAATACCCATCAAGATCAACATGCTGATTTTATGCCTATGTTCAATTCATCATCATCATCTCCATCACCATCCACGCATGCCACAGTTCTCAATTCCATAATTGACAGGTTGCCTATGCTAGATCATGGACTAAACGTCCCAGTTTCTGGTGGATTCTTCAATGCTGCAGGGCCATGCTTCTCAACAACGCAAAGTGGAGTTGATCACAAAGGTTTTTACTTGGAAAATGGAGGAATATTTGGGAGTGTAAATATTGGGACAGAAGGGGACATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACCTGCAACACAGACACTAACCATAGTAATTACTTTGATGACATAAACAGTGTCATCCTTAACAACTGCTGCAACAACAAGAGGACTGAAAATAGGGCTGGGGTGGAGAATTTATTTCAAGAAGAGTTAACCATGGGAGAGTGGGATTTGGAGGAGTTGATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAATATCCAATGA 1002 0.4311 MRKPEVSAKNNTNVNNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNNTSPNGSESSYDPNKDLNMAGFTTSNTHQDQHADFMPMFNSSSSSPSPSTHATVLNSIIDRLPMLDHGLNVPVSGGFFNAAGPCFSTTQSGVDHKGFYLENGGIFGSVNIGTEGDMYVPPLESVSTTSDHNLKVESTCNTDTNHSNYFDDINSVILNNCCNNKRTENRAGVENLFQEELTMGEWDLEELMKDVSSFPFLDFSNIQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02189 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Viun11g02189 333 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Viun11g02189 333 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Viun11g02189 333 CDD SANT 75 115 IPR001005 -
Viun11g02189 333 FunFam Transcription factor MYB46 74 144 - -
Viun11g02189 333 SMART sant 19 69 IPR001005 -
Viun11g02189 333 SMART sant 72 120 IPR001005 -
Viun11g02189 333 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Viun11g02189 333 PANTHER MYB DOMAIN PROTEIN 55 14 271 - -
Viun11g02189 333 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Viun11g02189 333 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Viun11g02189 333 Gene3D - 17 73 - -
Viun11g02189 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Viun11g02189 333 MobiDBLite consensus disorder prediction 124 146 - -
Viun11g02189 333 Gene3D - 74 145 - -
Viun11g02189 333 CDD SANT 23 67 IPR001005 -
Viun11g02189 333 FunFam MYB transcription factor 17 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02189 Viun-Chr11 36785767 36788118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02189 1 329 MYB Transcription Factor Family AT3G08500 44.173 7.06e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun11g02189 Myb_DNA-binding 9.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02189 K09422 - gmx:100786151 594.349