Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02149 ATGAGTTTTGTCTTCCGAGGTAGTAGGGGAGATATTGAAAGTGGCTTTTCAGAATATGTTCCTGAAAGAACCTTGATGCGGGTTCATCCAGCTCGCCCAGTTAATGGGAATTCTCTAGCTTTTCTTATCACAGTTATTTTGATATTCATGATATTAAACTCCCCTCAGATGTTACATCATTTTTTGCTCTGGGTTGTACTGGCTATCTTTGTGATGGCTACAAGTCTGAGGATGTATGCAACTTGTCAACAGCTTCAAGCACAGGCTAGGGCTCATGCTGCAGCAGCCTCTGGGTTGCTTGGCCATACTGAACTCCGTCTTCACATGCCACCATCTATTGCAATTGCGACCAGAGGAAGATTGCAGGGACTTAGACTTCAACTTGCACTCCTTGACCGTGAATTTGATGAGCTAGATTATGAAACTTTGAGAGCTCTTGACACTGATACTGCTCCTAGTACTCGTTCAATGACTGAGGAAGAGATAAATGCTTTGCCTATTCACACTTATAAAGTTCCAGTCCCACCAAAGGATGGCTCTGCCGGTCTGGCATCCTCTTCAGGTGCAGCTGAGATTAAACAAGAATCTGGAGGAACAGAGGCAGGTATCAGAGGTTCAGAAGATGAGCTGACATGTACTATATGCTTGGACCAAGTTAAGAGGGGGGAGCTTGTTCGTAGCTTACCATGCTTGCATCAGTTTCATGCCAATTGCATTGATCCATGGCTCCGGCAACAAGGAACATGTCCTGTGTGCAAATTAAGGATAGGGTCGGGAAGTGGGGGAAGCAGGGAGAGCGAATCCGATGGTTCAGATATTGCGTAA 825 0.4545 MSFVFRGSRGDIESGFSEYVPERTLMRVHPARPVNGNSLAFLITVILIFMILNSPQMLHHFLLWVVLAIFVMATSLRMYATCQQLQAQARAHAAAASGLLGHTELRLHMPPSIAIATRGRLQGLRLQLALLDREFDELDYETLRALDTDTAPSTRSMTEEEINALPIHTYKVPVPPKDGSAGLASSSGAAEIKQESGGTEAGIRGSEDELTCTICLDQVKRGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRIGSGSGGSRESESDGSDIA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02149 274 CDD RING-H2_PA-TM-RING 211 253 - -
Viun11g02149 274 SMART ring_2 212 252 IPR001841 -
Viun11g02149 274 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Viun11g02149 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 259 IPR013083 -
Viun11g02149 274 PANTHER TARGET OF ERK KINASE MPK-1 1 258 - -
Viun11g02149 274 MobiDBLite consensus disorder prediction 176 203 - -
Viun11g02149 274 SUPERFAMILY RING/U-box 207 257 - -
Viun11g02149 274 Pfam Ring finger domain 211 253 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02149 Viun-Chr11 36590706 36595125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02149 1 274 C3H Transcription Factor Family AT3G55530 69.314 1.78e-126 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02149 K16283 - gmx:100805406 473.396