Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02139 ATGGATCCACGTTTCGAGTCCAATTTCATCAACGGTTTTAAACCTAACCAAGTGCCCAACACGGTTGTTGCAGAGGATCAGTTCCTTGTCCCTGTTAATGGGATGATGAGACCCTTTGAGTTTGGGTTCAGTGATAACCCGTTAATTCTTCCACCTGATCTAAACTTTGCTCAGAACCATGTTTCCTTTGCCCCCGATGAGGAGTCTCCGTTGGATGAGATTGATTTTTCTGCCACTGTCTTACGCTACATAAACCAAATGCTTATGGAAGAGGACTTGGAGGCGAAGTCGTGTATGTTTCATGATTCCTTGGCTCTCCAAGCTGCTGAGAAATCATTCTATGAGGCCATTGGTGAGACACACCCTTCTTCAGTAAAAACCTATCACAACGTGGACAGCCCTGAGGATAGTAGTTTCAGTGATTATGGCAGCAGTGGTACAACCACTAGCACTACTAACTCGATTGATTCCCATTGGAATAACGTTGATCTTACAGACTATAAGCCTTCCATACTGCAAACAACTTTTCCCACTGACTTTGTTTTCCAGGCCAGTTCAATCCAATCTTCCATGAACACCACAAGCAACTTCGGTGTTACCGATAGAGGATTCTTGCCAACGGCTGGATTTTTGGATCCAACCTTGTTTAGCAAGAGTGAGTCTGTACTGCAATTTGAGAGGGGTGTGGAAGAAGCCAATAAGTTCCTACCTAAAGTGAATCCTTTGGTTATTGACTTGGAGAACCCCACTTTTAGGAAGGTTCCTCCTCTGCAGGAGGAAATTAAGGCAGAGAGAGATGAAATTTCTGCGGAGTTAAGAGGAAGGAAGAATCACGGGCGGGAAGATGAAGAAGCAGATTCGCAAGATGGGAGAAGCAACAAGCAATCTGCTGTCTACATTGATGACAGTGAGATATCAGAATTGCTTGATAAGGTTCTGCTGGGCACTGGATGCAGAAAGGAGCCAGCTCCTTTGTGTATTTGTTACGCAGACCTTCCTAATGGAGCATCCTCGAGTGCACAGAAGAAATTAGAAGAAACAAACAAGTCTGGTGGTGGGAAGAGCCGTGTTAAGAAGCAAGGAAACACAAAAGGAGTTGTGGATCTGAGGACATTGTTGATTCTGTGTGCACAAGCTGTTTCTTCTGATGATCGTGTGTCTGCTAATGAATTGCTGAAGCAGATAAGGCAACATACTTCTCCTTTGGGTGATGGGACTCAGAGGTTGGCCCATTGCTTTGCAAATGCTCTTGAAGCACGCTTGGCTGGGACAGGAACTCAGATGTATACTGCTTTATCACACAAAAGAACCTCTGCAGCAGACATGGTGAAAGCTTACCAAATGTATATTTCAGCCTGTCCATTCAAGAAGCTATCAATCATTTTTGCAAACCATACAATTCTGCAGCTAGCCATGGAAGTTGAATCTCTTCACATTATAGACTTTGGCATCCGTTATGGCTTCCAATGGCCTGCTCTTATTTATCGTCTATCAAAAAGACTCGGTGGGCCTCCCAAGCTTCGGATTACAGGGATAGAACTCCCACAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAGCAGACGGGGCTGCGCCTTAAAAGATATTGTGATCGCTTTAAAGTTCCATTCGAGTTCAATGCCATTGCACAGAAATGGGAAACCATCAAAGTTGAGGACTTGAAGATAAAGGAGAATGAACTTCTTGCAGTGAATTCTATGTTTAGGTTTCAGAATCTACTTGATGAGACAGTTGTGTTGAACAGTCCCCGTGATGCCGTTTTAAGTTTAATAAGGAAGGCAAATCCCAGTATTTTTATACAAGGTACTGTCAATGGAAGCTACAATGCTCCATTCTTTGTAACACGGTTCCGGGAGGCCCTTTTCCATTATTCTACGTTGTTTGATGTGCTTGACACTAATGTCAGTCGTGAAGATCCAATGAGGTTGATGTTTGAGAAAGAGTTCTTTGGTCGGAGAGTAATGAATGCTTTAGCTTGTGAGGGCTGTGAGAGGGTTGAGAGGCCCGAGACATACAAGCAATGGCAGGTTAGGAACACCAGAGCTGGATTTAGGCAACTTCCCCTGGATAAACATCTCATCAACAAATTAAGATGCAAGTTGAAAGATATATATCACAGTGATTTCATGCTTCTTGAAGATGCAAACTTTATGCTGCAAGGTTGGAAAGGCAGAGTAGTTTATGCTTCATCTTGTTGGGTGCCTGCATAG 2229 0.4383 MDPRFESNFINGFKPNQVPNTVVAEDQFLVPVNGMMRPFEFGFSDNPLILPPDLNFAQNHVSFAPDEESPLDEIDFSATVLRYINQMLMEEDLEAKSCMFHDSLALQAAEKSFYEAIGETHPSSVKTYHNVDSPEDSSFSDYGSSGTTTSTTNSIDSHWNNVDLTDYKPSILQTTFPTDFVFQASSIQSSMNTTSNFGVTDRGFLPTAGFLDPTLFSKSESVLQFERGVEEANKFLPKVNPLVIDLENPTFRKVPPLQEEIKAERDEISAELRGRKNHGREDEEADSQDGRSNKQSAVYIDDSEISELLDKVLLGTGCRKEPAPLCICYADLPNGASSSAQKKLEETNKSGGGKSRVKKQGNTKGVVDLRTLLILCAQAVSSDDRVSANELLKQIRQHTSPLGDGTQRLAHCFANALEARLAGTGTQMYTALSHKRTSAADMVKAYQMYISACPFKKLSIIFANHTILQLAMEVESLHIIDFGIRYGFQWPALIYRLSKRLGGPPKLRITGIELPQPGFRPAERVQQTGLRLKRYCDRFKVPFEFNAIAQKWETIKVEDLKIKENELLAVNSMFRFQNLLDETVVLNSPRDAVLSLIRKANPSIFIQGTVNGSYNAPFFVTRFREALFHYSTLFDVLDTNVSREDPMRLMFEKEFFGRRVMNALACEGCERVERPETYKQWQVRNTRAGFRQLPLDKHLINKLRCKLKDIYHSDFMLLEDANFMLQGWKGRVVYASSCWVPA 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02139 742 Pfam GRAS domain family 369 739 IPR005202 -
Viun11g02139 742 ProSiteProfiles GRAS family profile. 360 740 IPR005202 -
Viun11g02139 742 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 293 733 IPR005202 -
Viun11g02139 742 MobiDBLite consensus disorder prediction 270 290 - -
Viun11g02139 742 MobiDBLite consensus disorder prediction 270 297 - -
Viun11g02139 742 MobiDBLite consensus disorder prediction 340 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02139 Viun-Chr11 36538129 36541513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02139 80 742 GRAS Transcription Factor Family AT1G07530 54.871 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun11g02139 GRAS 1.6e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02139 - - gmx:100815586 1226.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03570 5 45321378 45323658 Viun11g02139 11 36538129 36541513 PCT