Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02131 ATGTCCATAAGTACTCCACCCTCTCCCACTCACCAATCGCCTCTCATAACTATTTTCAACTTCCAGAGAAGAAAAATGGCAGTGCCCACCATTTTGCTCTGCGTTATGTTTACCATCTCCTTAACATGGACGATGGTTGAAGCACGCATTCCGGGGATTTACTCCGGCGGTGCATGGGAAAGTGCTCACGCAACCTTCTACGGAGGATCCGATGCTTCCGGCACCATGGGTGGAGCGTGTGGGTACGGGAACCTCTACAGCCAAGGCTACGGCGTGAACACGGCGGCGTTAAGCACGGCGCTTTTCAACAACGGCCTCAGCTGCGGCGCGTGCTTTGAGATCAAGTGCGCTAACGACAAAAAGTGGTGTCACTCGGGAAGTCCTTCCATCTTCATCACCGCAACAAACTTTTGCCCTCCCAACTTCGCTCTTCCAAACGACAATGGCGGCTGGTGCAACCCTCCTCGTCCTCACTTCGACCTTGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGCGCCGGAATTGTCCCTGTTGCCTTTCGCCGAGTGCCATGTAGAAAGCACGGAGGGATAAGGTTCACCGTCAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTGGCAGGTGCGGGGGATATCGTGCGCACTTACGTGAAGGGGTCCCGAACCGGGTGGATGCCAATGAGCCGAAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGGCAGACGCTGTCGTTTCGCGTGACGGGCAGCGACCGCCGCACCTCCACCTCGTGGAACATCGCTCCACCCAGTTGGCAATTCGGTCAAACTTTCACCGGAAAAAATTTCCGAGTCTGA 858 0.5501 MSISTPPSPTHQSPLITIFNFQRRKMAVPTILLCVMFTISLTWTMVEARIPGIYSGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDKKWCHSGSPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKHGGIRFTVNGFRYFNLVLISNVAGAGDIVRTYVKGSRTGWMPMSRNWGQNWQSNAVLVGQTLSFRVTGSDRRTSTSWNIAPPSWQFGQTFTGKNFRV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02131 285 Pfam Expansin C-terminal domain 192 269 IPR007117 -
Viun11g02131 285 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 77 191 IPR007112 -
Viun11g02131 285 Pfam Lytic transglycolase 94 180 IPR009009 -
Viun11g02131 285 SMART dpbb_1 94 181 IPR007112 -
Viun11g02131 285 CDD DPBB_EXPA_N 59 186 - -
Viun11g02131 285 SUPERFAMILY PHL pollen allergen 188 280 IPR036749 -
Viun11g02131 285 Gene3D - 191 283 IPR036749 -
Viun11g02131 285 FunFam Expansin 48 187 - -
Viun11g02131 285 Gene3D - 48 187 IPR036908 -
Viun11g02131 285 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 280 IPR007117 -
Viun11g02131 285 PRINTS Expansin/Lol pI family signature 98 116 IPR007118 GO:0005576
Viun11g02131 285 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Viun11g02131 285 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576
Viun11g02131 285 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Viun11g02131 285 PRINTS Expansin/Lol pI family signature 58 73 IPR007118 GO:0005576
Viun11g02131 285 PRINTS Expansin/Lol pI family signature 266 280 IPR007118 GO:0005576
Viun11g02131 285 FunFam Expansin 191 283 - -
Viun11g02131 285 PANTHER EXPANSIN-A15 41 283 IPR002963 GO:0009664
Viun11g02131 285 SUPERFAMILY Barwin-like endoglucanases 58 209 IPR036908 -
Viun11g02131 285 PRINTS Expansin signature 116 127 IPR002963 GO:0009664
Viun11g02131 285 PRINTS Expansin signature 149 166 IPR002963 GO:0009664
Viun11g02131 285 PRINTS Expansin signature 190 202 IPR002963 GO:0009664
Viun11g02131 285 PRINTS Expansin signature 130 140 IPR002963 GO:0009664
Viun11g02131 285 PRINTS Expansin signature 166 179 IPR002963 GO:0009664
Viun11g02131 285 PRINTS Expansin signature 237 258 IPR002963 GO:0009664
Viun11g02131 285 PRINTS Expansin signature 266 282 IPR002963 GO:0009664
Viun11g02131 285 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Viun11g02131 285 PRINTS Expansin signature 89 103 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02131 Viun-Chr11 36503779 36505376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02131 31 285 Expansin Gene Family AT2G39700 83.137 2.64e-164 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02131 - - gmx:100809139 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03557 5 45255492 45257034 Viun11g02131 11 36503779 36505376 PCT