Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02124 ATGAAAATCAAAAGGAATTCTAGTAAAGCAAACTTTGCTGCCAAAAATGCTCCTCCATTCTGTGAAATATGGTTTGTCTATAAAGGAAAACACATATGGACAAGAGAAGCTTCTGAAACTCCTTGTTTTGTACCTTCGCATGCTCAACCTGAGACTACAACGGCAGAGAGCTTGAGTTGTAGATCTTTTCAATATGGTACAAATGAATTAATCCATTCAGAATGTCTTCAATCAAATTCTGCAAGGGCTACAAGAAGTACAGTTCCAAATGTAATCATTGAAGCAGAATCCACCTTTTCATCCAAATCATCCAGTTGTAGTAGTCATTGTTCTCCCCAACATTCAGAGCTCGAGGAAGAAACAATAGATAGTCAACTTATTGAAGTTAATGCTGCAACAGACAAGGCCCTTGTGGAGCTGTTGAAGTGCAGAGCGTTGGAACTCAAAGCCATTGAGGCCATTAGTAAGGTGAACTTGTTTGAATCTGCCCATGCACATGAAGCAAAGCTCAGAAAAGAGGTTGAGGATGCAGTGAGCGCTACAATAAAGGAGCAACGGATGTTGTTGGAGGAGAAAGAAGAAATTGCTAGTGAACTGGAAAGGACCACAAGAAGTATTTCCCTTCTAGGAAATTGTGCACATGAAATCAACAGTAAGTGTGATGAAGCTGCAAAGGAACTATCACTAATTCAAGCATCCTTCTCAAGCTTGCAGAATGAAAAGCAGGAAATCAGGCGACAGAAAATGGAGGCTCTGCACTGGCTTGAGCGGTGGAAAAGTTGTGGACATGTTGGAGCAGATCACTGCGATGGGATTATTGGATTTGCCGAAGAATTTCCAGAGCTGGCAGAATTTCCATTATCAGATCTCCAAAACGCTACATGCAACTTTTCTGAGAGTTTCAAAGCTATGGAGGGTGGATATGGTTCTATTTACAAGGGAGAAATGTTGGGTAGAACAGTTGCTATAAGGAAGCTCCATTCACACAACATGCAAGGATCGACAGAGTTTCAGCAAGAGGTTCGAGTTCTTGGTAGGCTCCAGCACCCTAATCTGGTTACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCCTTTGTATATGAGTACTATCCCAATGGAACTCTTCAAGATTACCTATTCCGAAAGGGAAGTCTTCTCCCTTTGACATGGAGTATCCGAGCACGATGGATTTCTGAAATTGCCAGAGCTCTCTGCTTCCTACATTCTTCCAGACCTGAAACTATTATCCATGGCGGTCTGACACTTGAAACTGTCCTTCTTGACACTGGACTTGGTTGCAAGCTATGTGAATTTGGGTTCAGCAGGCTGGTGAAAGAGGAGTCACTTTCTCTTCCTAGTTTTCACTTGAGCACCGAGCCAAAGGGTTCTTTTTCATATACAGATCCTGAGCTTCAGAGAACTGGAGTACTAACTCCTAAATCTGACGTATACTCTTTTGGACTCATCATTTTGCAAATTCTCACTGGTAGGACACCAGTTGGATTAGCTGGTGAAGTCCGCAGAGCAGTTTCATGTGGAAAATTGTCTTCGATTTTGGATTCTTCAGCCGGAGAATGGAATTGCACCGCGTCAACACGGTTGGCTGAACTGGGATTGCAATGCTGCCAACTGAACAGCAGAGACAGACCAGAGTTAACACCTTCTCTAGTGAGGGAACTGAAGCAATTGTATGTTTCAGAAGAGCCACCAGTGCCATCTTTTTTCTTGTGTCCAATCTTTCAGGAAATAATGCATGATCCGCAAGTTGCAGCAGACGGATTTACTTATGAAAGGAAGGCCATAAGTGAATGGCTGGATAATGGGCACGAAACTTCTCCTATGACTAATTTAAAGTTGAGTTACTTGCATCTCACTCCCAATCATGCACTTCGACTTGCTATTCAAGGCTGGCTTTGCAAATCTTGA 1926 0.4283 MKIKRNSSKANFAAKNAPPFCEIWFVYKGKHIWTREASETPCFVPSHAQPETTTAESLSCRSFQYGTNELIHSECLQSNSARATRSTVPNVIIEAESTFSSKSSSCSSHCSPQHSELEEETIDSQLIEVNAATDKALVELLKCRALELKAIEAISKVNLFESAHAHEAKLRKEVEDAVSATIKEQRMLLEEKEEIASELERTTRSISLLGNCAHEINSKCDEAAKELSLIQASFSSLQNEKQEIRRQKMEALHWLERWKSCGHVGADHCDGIIGFAEEFPELAEFPLSDLQNATCNFSESFKAMEGGYGSIYKGEMLGRTVAIRKLHSHNMQGSTEFQQEVRVLGRLQHPNLVTLLGVCPEAWSFVYEYYPNGTLQDYLFRKGSLLPLTWSIRARWISEIARALCFLHSSRPETIIHGGLTLETVLLDTGLGCKLCEFGFSRLVKEESLSLPSFHLSTEPKGSFSYTDPELQRTGVLTPKSDVYSFGLIILQILTGRTPVGLAGEVRRAVSCGKLSSILDSSAGEWNCTASTRLAELGLQCCQLNSRDRPELTPSLVRELKQLYVSEEPPVPSFFLCPIFQEIMHDPQVAADGFTYERKAISEWLDNGHETSPMTNLKLSYLHLTPNHALRLAIQGWLCKS 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02124 641 Pfam U-box domain 571 640 IPR003613 GO:0004842|GO:0016567
Viun11g02124 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 570 641 IPR013083 -
Viun11g02124 641 ProSiteProfiles U-box domain profile. 570 641 IPR003613 GO:0004842|GO:0016567
Viun11g02124 641 SUPERFAMILY Protein kinase-like (PK-like) 281 557 IPR011009 -
Viun11g02124 641 Coils Coil 182 202 - -
Viun11g02124 641 PANTHER OS02G0152300 PROTEIN 6 635 - -
Viun11g02124 641 Gene3D Transferase(Phosphotransferase) domain 1 370 569 - -
Viun11g02124 641 Pfam Protein tyrosine and serine/threonine kinase 305 553 IPR001245 GO:0004672|GO:0006468
Viun11g02124 641 Coils Coil 227 247 - -
Viun11g02124 641 SMART Ubox_2 574 637 IPR003613 GO:0004842|GO:0016567
Viun11g02124 641 SUPERFAMILY RING/U-box 568 640 - -
Viun11g02124 641 ProSiteProfiles Protein kinase domain profile. 297 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02124 641 CDD RING-Ubox_WDSUB1-like 572 627 - -
Viun11g02124 641 Gene3D Phosphorylase Kinase; domain 1 275 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02124 Viun-Chr11 36456841 36461551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02124 7 638 U-box Gene Family AT2G45910 36.538 1.61e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun11g02124 PK_Tyr_Ser-Thr 2.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02124 - - gmx:100799032 1050.04