Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02123 ATGGCCATGGATGAGTATGAATGTGATGAGAAGGTCCACGTGGCAGTTGGGAAGTCCCTTAAGAAAGGCACCACTTTGATTCAATGGTGTTTCACCCATTTCAGAAAAGCACAGATATGCTTACTTCATGTTTACCAACCTTCTACTATGATCCCTACACTGTTGGGAAAATTGCCAGCATCCCAAGCTAGTCCTGAAGTCGTGTCTGCTTATAGAATAGAGGAAAGGGAAGAGACCAAGAGGCTTCTGGAGAAGTACTTGAGCCTTTGCAGTGCAGCTAAGGTTAAGGTAAGTAGTGTCGTTGGTGAAGCTGATCAAGTTCAGAAAGGGATTGTGGATTTGGTTACTGTGCATAATATCAGGAAGCTTGTTATTGGAGCAATAACCCCAGAAAATTGCATGAAAATCAAAAGGAATTCTAGTAAAGCAAACTTTGCTGCCAAAAATGCTCCTCCATTCTGTGAAATATGGTTTGTCTATAAAGGAAAACACATATGGACAAGAGAAGCTTCTGAAACTCCTTGTTTTGTACCTTCGCATGCTCAACCTGAGACTACAACGGCAGAGAGCTTGAGTTGTAGATCTTTTCAATATGGTACAAATGAATTAATCCATTCAGAATGTCTTCAATCAAATTCTGCAAGGGCTACAAGAAGTACAGTTCCAAATGTAATCATTGAAGCAGAATCCACCTTTTCATCCAAATCATCCAGTTGTAGTAGTCATTGTTCTCCCCAACATTCAGAGCTCGAGGAAGAAACAATAGATAGTCAACTTATTGAAGTTAATGCTGCAACAGACAAGGCCCTTGTGGAGCTGTTGAAGTGCAGAGCGTTGGAACTCAAAGCCATTGAGGCCATTAGTAAGGTGAACTTGTTTGAATCTGCCCATGCACATGAAGCAAAGCTCAGAAAAGAGGTTGAGGATGCAGTGAGCGCTACAATAAAGGAGCAACGGATGTTGTTGGAGGAGAAAGAAGAAATTGCTAGTGAACTGGAAAGGACCACAAGAAGTATTTCCCTTCTAGGAAATTGTGCACATGAAATCAACAGTAAGTGTGATGAAGCTGCAAAGGAACTATCACTAATTCAAGCATCCTTCTCAAGCTTGCAGAATGAAAAGCAGGAAATCAGGCGACAGAAAATGGAGGCTCTGCACTGGCTTGAGCGGTGGAAAAGTTGTGGACATGTTGGAGCAGATCACTGCGATGGGATTATTGGATTTGCCGAAGAATTTCCAGAGCTGGCAGAATTTCCATTATCAGATCTCCAAAACGCTACATGCAACTTTTCTGAGAGTTTCAAAGCTATGGAGGGTGGATATGGTTCTATTTACAAGGGAGAAATGTTGGGTAGAACAGTTGCTATAAGGAAGCTCCATTCACACAACATGCAAGGATCGACAGAGTTTCAGCAAGAGGTTCGAGTTCTTGGTAGGCTCCAGCACCCTAATCTGGTTACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCCTTTGTATATGAGTACTATCCCAATGGAACTCTTCAAGATTACCTATTCCGAAAGGGAAGTCTTCTCCCTTTGACATGGAGTATCCGAGCACGATGGATTTCTGAAATTGCCAGAGCTCTCTGCTTCCTACATTCTTCCAGACCTGAAACTATTATCCATGGCGGTCTGACACTTGAAACTGTCCTTCTTGACACTGGACTTGGTTGCAAGCTATGTGAATTTGGGTTCAGCAGGCTGGTGAAAGAGGAGTCACTTTCTCTTCCTAGTTTTCACTTGAGCACCGAGCCAAAGGGTTCTTTTTCATATACAGATCCTGAGCTTCAGAGAACTGGAGTACTAACTCCTAAATCTGACGTATACTCTTTTGGACTCATCATTTTGCAAATTCTCACTGGTAGGACACCAGTTGGATTAGCTGGTGAAGTCCGCAGAGCAGTTTCATGTGGAAAATTGTCTTCGATTTTGGATTCTTCAGCCGGAGAATGGAATTGCACCGCGTCAACACGGTTGGCTGAACTGGGATTGCAATGCTGCCAACTGAACAGCAGAGACAGACCAGAGTTAACACCTTCTCTAGTGAGGGAACTGAAGCAATTGTATGTTTCAGAAGAGCCACCAGTGCCATCTTTTTTCTTGTGTCCAATCTTTCAGGAAATAATGCATGATCCGCAAGTTGCAGCAGACGGATTTACTTATGAAAGGAAGGCCATAAGTGAATGGCTGGATAATGGGCACGAAACTTCTCCTATGACTAATTTAAAGTTGAGTTACTTGCATCTCACTCCCAATCATGCACTTCGACTTGCTATTCAAGGCTGGCTTTGCAAATCTTGA 2325 0.4297 MAMDEYECDEKVHVAVGKSLKKGTTLIQWCFTHFRKAQICLLHVYQPSTMIPTLLGKLPASQASPEVVSAYRIEEREETKRLLEKYLSLCSAAKVKVSSVVGEADQVQKGIVDLVTVHNIRKLVIGAITPENCMKIKRNSSKANFAAKNAPPFCEIWFVYKGKHIWTREASETPCFVPSHAQPETTTAESLSCRSFQYGTNELIHSECLQSNSARATRSTVPNVIIEAESTFSSKSSSCSSHCSPQHSELEEETIDSQLIEVNAATDKALVELLKCRALELKAIEAISKVNLFESAHAHEAKLRKEVEDAVSATIKEQRMLLEEKEEIASELERTTRSISLLGNCAHEINSKCDEAAKELSLIQASFSSLQNEKQEIRRQKMEALHWLERWKSCGHVGADHCDGIIGFAEEFPELAEFPLSDLQNATCNFSESFKAMEGGYGSIYKGEMLGRTVAIRKLHSHNMQGSTEFQQEVRVLGRLQHPNLVTLLGVCPEAWSFVYEYYPNGTLQDYLFRKGSLLPLTWSIRARWISEIARALCFLHSSRPETIIHGGLTLETVLLDTGLGCKLCEFGFSRLVKEESLSLPSFHLSTEPKGSFSYTDPELQRTGVLTPKSDVYSFGLIILQILTGRTPVGLAGEVRRAVSCGKLSSILDSSAGEWNCTASTRLAELGLQCCQLNSRDRPELTPSLVRELKQLYVSEEPPVPSFFLCPIFQEIMHDPQVAADGFTYERKAISEWLDNGHETSPMTNLKLSYLHLTPNHALRLAIQGWLCKS 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02123 774 Gene3D Phosphorylase Kinase; domain 1 408 502 - -
Viun11g02123 774 Coils Coil 315 335 - -
Viun11g02123 774 PANTHER OS02G0152300 PROTEIN 12 768 - -
Viun11g02123 774 CDD RING-Ubox_WDSUB1-like 705 760 - -
Viun11g02123 774 SMART Ubox_2 707 770 IPR003613 GO:0004842|GO:0016567
Viun11g02123 774 SUPERFAMILY RING/U-box 701 773 - -
Viun11g02123 774 Gene3D Transferase(Phosphotransferase) domain 1 503 702 - -
Viun11g02123 774 Pfam Protein tyrosine and serine/threonine kinase 438 686 IPR001245 GO:0004672|GO:0006468
Viun11g02123 774 ProSiteProfiles Protein kinase domain profile. 430 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02123 774 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 31 127 - -
Viun11g02123 774 SUPERFAMILY Protein kinase-like (PK-like) 414 690 IPR011009 -
Viun11g02123 774 Coils Coil 360 380 - -
Viun11g02123 774 Pfam U-box domain 704 773 IPR003613 GO:0004842|GO:0016567
Viun11g02123 774 CDD STK_N 11 162 - -
Viun11g02123 774 Gene3D HUPs 7 127 IPR014729 -
Viun11g02123 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 774 IPR013083 -
Viun11g02123 774 ProSiteProfiles U-box domain profile. 703 774 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02123 Viun-Chr11 36456839 36461551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02123 9 771 U-box Gene Family AT2G45910 36.094 2.03e-155 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun11g02123 PK_Tyr_Ser-Thr 3.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02123 - - gmx:100799032 1265.37