Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02119 ATGGAGGGTGAAAACGCGAGCAAGGTGATTGAGTTGGTGAACGAGATAGCAAGTATCTCCGATTACAGGCCTCCGGTGAAGAAGCAGTACTGCAACTTGGCGCGGAGGTTGAAGCTGCTGATCCCGATGTTCGAGGAGATTAGGGACATGAAAGACCAGATCCCAAAGGACACTTCCAAAGCCGTCCTCGCTTTCAAGGAAGCTCTCGAATCCGCCGGGGAACTTCTCAGATTTGGAAGCGAAGGCAGCAAGCTTTACTTGGTCCTTGAGCGGGATGGCATTATGAATAAATTCTACGAGGTGACAGCTCGGTTGGAACAATCGTTGGGTGGTATTTCGTATGATAAACTTGATATCTCAGATGAAGTTAAAGAGCAGGTTGAGCTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGCTTGATGAACCAGATGTTAGGTTGTATGAGGATATGTTGTCCCTCTACGACAACAGCACTGATGCAGCTACAGATCCATCTGTTCTAAGTCGATTAGCTGAAAAATTGCAACTGATGGGAATAGCTGATCTTACGCAAGAATCACTAGCTTTGCATGAGATGGTGGTATCAAGTGGTGGGGATCCTGGGGCACGCATCGAGAAAATAGCAATGTTACTGAAGAAGATAAAGGATTACGTGCAAACAGAAAATCTAGTTAAGGATGATAATTTAGGAGGAAAAGGCATTTTTGCAAAAGTCTATGGAGTCAGTACAAATGAAAAGAGTCATCAGGCCCCTGTTATTCCTGATGATTTTCGATGTCCCATTTCCCTGGAATTAATGAAGGATCCTGTGATTGTTTCAACCGGACAGACTTATGAGCGTTCTTGTATTGAGAAATGGTTGCAAGCAGGGCATGGGACATGCCCCAAAACACAGCAGACTCTCACTAGCACCGTTCTCACACCCAACTATGTCTTACGAAGTCTCATAGCACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCAGTTCACAGCCTAGTAAATCAGCATCAGCCTACTCACCAGCTGAGCGAAGTAAGATCGACGGTCTTCTCCAAAAGCTCACATCTGGCAGTCCCGAAGACCAGAGATCAGCTGCCGGTGAGATCCGCCTTCTCGCAAAGCGTAATGCAGATAACCGTGTTGCCATTGCTGAAGCCGGTGCAATACCTCTCCTCGTTGGTCTCTTGTCCGTGCCCGACTCCCGCACTCAAGAACATGCTGTGACAGCGCTTCTGAATCTTTCCATATACGAAAATAACAAAGGAAGCATCGTGAATTCAGGGGCAGTTCCAGGTATAGTTCATGTCCTGAAGAAGGGAAGCATGGAAGCGCGAGAAAATGCTGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTACAATTGGGTCTTCAGGAGCCATACCACCACTAGTGACACTACTGAGCGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTGTTCAATTTGTGCATTTACCAGGGCAACAAGGGGAAGGCAGTGCGGGCTGGCGTTATTCCCACACTGATGCGACTGCTGACGGAACCTAGTGGGGGAATGGTAGATGAAGCATTAGCCATTTTGGCGATCCTGGCTAGCCATCCTGATGGAAAGGCTACGATTAGAGCTGCAGAGGCAGTGCCAGTTTTAGTAGAGTTCATTGGGAATGGTTCCCCAAGGAACAAAGAAAATGCAGCTGCTGTTTTAGTTCATCTCTGTTCTGGAGATCAACAATATCTGGCACAGGCCCAAGAGCTGGGGGTGATGGGTCCACTGTTGGAGTTGGCTCAAAATGGTACAGACCGAGGAAAAAGAAAGGCTTTACAGTTACTAGAGCGTATGGGAAGGTTACTTGAGCAACAGCAGGAAGTTCCAACACAAACTGAAACTCAAGCTCAGAACGAGGAAACCCAACCTCCTTTGATTACTAACCCCGATGATTCCTAA 1983 0.473 MEGENASKVIELVNEIASISDYRPPVKKQYCNLARRLKLLIPMFEEIRDMKDQIPKDTSKAVLAFKEALESAGELLRFGSEGSKLYLVLERDGIMNKFYEVTARLEQSLGGISYDKLDISDEVKEQVELVLAQFRRAKGRLDEPDVRLYEDMLSLYDNSTDAATDPSVLSRLAEKLQLMGIADLTQESLALHEMVVSSGGDPGARIEKIAMLLKKIKDYVQTENLVKDDNLGGKGIFAKVYGVSTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLQAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSSSQPSKSASAYSPAERSKIDGLLQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVNSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPDGKATIRAAEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMGPLLELAQNGTDRGKRKALQLLERMGRLLEQQQEVPTQTETQAQNEETQPPLITNPDDS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02119 660 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Viun11g02119 660 FunFam RING-type E3 ubiquitin transferase 255 328 - -
Viun11g02119 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Viun11g02119 660 MobiDBLite consensus disorder prediction 633 660 - -
Viun11g02119 660 CDD RING-Ubox_PUB 256 308 IPR045210 -
Viun11g02119 660 FunFam RING-type E3 ubiquitin transferase 430 529 - -
Viun11g02119 660 SMART arm_5 546 586 IPR000225 GO:0005515
Viun11g02119 660 SMART arm_5 423 463 IPR000225 GO:0005515
Viun11g02119 660 SMART arm_5 588 628 IPR000225 GO:0005515
Viun11g02119 660 SMART arm_5 464 504 IPR000225 GO:0005515
Viun11g02119 660 SMART arm_5 505 545 IPR000225 GO:0005515
Viun11g02119 660 SMART arm_5 382 422 IPR000225 GO:0005515
Viun11g02119 660 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Viun11g02119 660 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Viun11g02119 660 Gene3D - 334 652 IPR011989 -
Viun11g02119 660 FunFam RING-type E3 ubiquitin transferase 2 115 - -
Viun11g02119 660 SUPERFAMILY ARM repeat 353 626 IPR016024 -
Viun11g02119 660 SUPERFAMILY RING/U-box 244 331 - -
Viun11g02119 660 CDD MLKL_NTD 7 135 - -
Viun11g02119 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Viun11g02119 660 PANTHER U BOX DOMAIN-CONTAINING 25 628 - -
Viun11g02119 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Viun11g02119 660 Gene3D - 4 114 IPR036537 GO:0007166
Viun11g02119 660 MobiDBLite consensus disorder prediction 328 348 - -
Viun11g02119 660 FunFam RING-type E3 ubiquitin transferase 530 647 - -
Viun11g02119 660 FunFam RING-type E3 ubiquitin transferase 336 429 - -
Viun11g02119 660 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Viun11g02119 660 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Viun11g02119 660 Pfam Neurochondrin 516 639 IPR008709 -
Viun11g02119 660 MobiDBLite consensus disorder prediction 330 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02119 Viun-Chr11 36415798 36420599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02119 1 660 U-box Gene Family AT3G46510 69.369 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02119 - - gmx:100812160 1167.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02119 11 36415798 36420599 Viun11g02119 11 36415798 36420599 ECH