Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02117 ATGGAGAGTGGAAATGAGGAGTTGGAGATGGGTGGGTCTAATGGGGTTGGAGCGAGTTCACGGTGGAACCCTACAAAAGAGCAAATAAGCATGCTAGAGAATCTGTATAAGCAGGGAATAAAAACTCCCAGTGCTGAGGAGATACAGCAGATAACTGCTAGGCTTAGGGCGTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTCAGAATCACAAAGCTAGGCAGAGACAGAAGCAGAAGCAAGAAACCATCGCTTACTTCAATCGCTTTCTTCACACTCCTCAGCCCTTTTTTTCTCCGCCAATTTGCCCAAATGGGCTGTGTCCTCCATATTGCATACCTCAGGTGCAGAGTGAAAATGGGTTTTATCCCCAACATCCAAAGGTGCTTGTACCAGTAGGTTTTAGGAGAAGACCGTCTGAGATATTTGTGCCCACAGACATGTCAAACGTTGTCGTGCAACAGAGAATCTCGGATTGTAACTTGAGCTACAGTAACCAAGAAACGTTGGATCTTTTTCCTCTGCACCCAACTGGTATTTTGGAAGGGAAAACAATGTCTTCTCAGGCTTCAGTTTCTGCTCATAGTTCCACTGATATCAATGAAGATGATCCTTCCCCACTTAACCAACCCTTCTTTGATTTTTTTACTACTTCTGGACAAGGTTCTTAG 678 0.444 MESGNEELEMGGSNGVGASSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQETIAYFNRFLHTPQPFFSPPICPNGLCPPYCIPQVQSENGFYPQHPKVLVPVGFRRRPSEIFVPTDMSNVVVQQRISDCNLSYSNQETLDLFPLHPTGILEGKTMSSQASVSAHSSTDINEDDPSPLNQPFFDFFTTSGQGS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02117 225 SMART HOX_1 17 84 IPR001356 GO:0003677
Viun11g02117 225 SUPERFAMILY Homeodomain-like 19 86 IPR009057 -
Viun11g02117 225 CDD homeodomain 21 81 IPR001356 GO:0003677
Viun11g02117 225 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 9 217 IPR044555 GO:0003700|GO:0099402
Viun11g02117 225 Gene3D - 19 87 - -
Viun11g02117 225 MobiDBLite consensus disorder prediction 1 22 - -
Viun11g02117 225 ProSiteProfiles 'Homeobox' domain profile. 15 80 IPR001356 GO:0003677
Viun11g02117 225 FunFam WUSCHEL-related homeobox 4 19 86 - -
Viun11g02117 225 MobiDBLite consensus disorder prediction 193 225 - -
Viun11g02117 225 Pfam Homeodomain 19 79 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02117 Viun-Chr11 36379219 36381036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02117 15 219 Wox Gene Family AT5G59340 43.568 2.83e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Viun11g02117 Homeodomain 4.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02117 - - pvu:PHAVU_011G064900g 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02117 11 36379219 36381036 Viun11g02117 11 36379219 36381036 ECH