Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02096 ATGCAAATAGCCAGTGCATTAGCGAAAGGCAACCCTCTTTTTTCCACCTTATCTAGATTTCTGTGTGTGCGTCATCATTCATCAACCAACTTGTTTGTCGCAGGACTTTCCTGGGATACCAATGAACCGATTCTGAAAGATGCCTTTGAGAAACATGGTGAAATAATTGAAGTTAGAGTAATATGTGATCATGTGACTGCGAAATCAAGAGGTTATGGATTTGTGCGGTTTGTTTCTGAAACTGCAGCTGCTACAGCTCGCAAAGAAATGAATGACCAGATACTGGATGGCAGACGCATTCGGGTTGCTTATGCACACAAAGGCTAG 327 0.4251 MQIASALAKGNPLFSTLSRFLCVRHHSSTNLFVAGLSWDTNEPILKDAFEKHGEIIEVRVICDHVTAKSRGYGFVRFVSETAAATARKEMNDQILDGRRIRVAYAHKG 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02096 108 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Viun11g02096 108 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 25 107 - -
Viun11g02096 108 SMART rrm1_1 30 103 IPR000504 GO:0003723
Viun11g02096 108 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Viun11g02096 108 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 14 108 - -
Viun11g02096 108 SUPERFAMILY RNA-binding domain, RBD 26 107 IPR035979 GO:0003676
Viun11g02096 108 Gene3D - 18 108 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02096 Viun-Chr11 36285585 36286956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02096 28 107 Eukaryotic Initiation Factors Gene Family AT4G34110 41.250 1.41e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02096 K13195 - gmx:100306540 175.637