Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02081 ATGTCTTCTGATTCTGCTGAAAACAATACCCCTGCGCCATGGAAGCTGGAAGAGGTTGTTTCAATTATTATAGTGTGCATTATCTTTCTTACAGTGAGTGATTGCTTCGGCGTATTGAAGCGTCTGTTGTGTGGAATTTTCCGAGGCAGAAACCAGGTTCCAAGGCGGTTTCTAGATGTGACCGTTCTCGACGATGATCCTTCCATGCAGGTTCAAAGCCGAGGATTGGAGTTTTGTGTGGTTCAATCTCTTCCAACGATTGAGTTCAAGAAAAACGAGGTAGAACAAGACAAGGGAAGTAATGTGGAATGTGCCATTTGTCTCGGAGAGTTTGAGGAAGGGGTGTTGCTGAAACATCTTCCAGAATGCAGGCATAGCTTCCATGTTCCATGCATTGATAAGTGGTTTCAGTCTCATTCAAATTGTCCTCTGTGTAGAGCATTTGTGCATCATCACTTGCTGCACTGTTCCGTAGATTCTTCTCACACATTGCTACAGCCTTTGAGCAGGGAAGACTTTGAAAGGGAAAATCTGTCTAACACACAACAACAGTTCCTTCCCCCTTGA 567 0.4427 MSSDSAENNTPAPWKLEEVVSIIIVCIIFLTVSDCFGVLKRLLCGIFRGRNQVPRRFLDVTVLDDDPSMQVQSRGLEFCVVQSLPTIEFKKNEVEQDKGSNVECAICLGEFEEGVLLKHLPECRHSFHVPCIDKWFQSHSNCPLCRAFVHHHLLHCSVDSSHTLLQPLSREDFERENLSNTQQQFLPP 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02081 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 151 IPR013083 -
Viun11g02081 188 Pfam Ring finger domain 103 146 IPR001841 -
Viun11g02081 188 SUPERFAMILY RING/U-box 80 152 - -
Viun11g02081 188 SMART ring_2 104 145 IPR001841 -
Viun11g02081 188 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Viun11g02081 188 PANTHER RING-H2 FINGER PROTEIN ATL16 22 163 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02081 Viun-Chr11 36205897 36207931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02081 66 149 Rapid Response to Elicitors AT3G16720 51.136 8.80e-22 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02081 - - gmx:121172630 253.832