Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02047 ATGGAGCAGAGAGTGAGAAGAATGGAAGCATTTCCGAGAGACCAACGTGGCTCGCTCGAAGTGTTCAACCCTTCGTCTTCTTACTCCAACGAGAAGCCGGTCAACTCGCCATTGCGCACTCAATCCACGTGGAAGACGTGGATGGAGTCACGCGCCGAGGAGCCACCGGAGGAGCAGCAACGCGGCGGTTCCGATGAGGTCACAGCCACGTCGTGGATGGCGCTAAAGGACTCCACTCCGCCGCTGCCAGCACAGACACTCGCCGCGGTGCTAGGCGAGCCTCCGGCGGAGGTCGGAAATGCCGCGAAGCGCGCCGCGGAATGGGGTCTGGTGCTGAAGACGGACACGGAAACCGGAAAGCCGCAGGGAGTGGCGGTTCGGACCTCCGGCGGGGAGGAGCCGAGCGCGAAGGTGACCGGTGGGTCGAGGAGGGACTCCGGGAACTCCGTTCGGAGCTCCGGCGAGTCCTCCGACGACGGGAGGGAGTACCGGGGAGGAATCCCGAGGGTTTCGGAGGACCTGAGGGACGCTTTGTCGGCGTTTCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATAATGTATGCCAGTGCCGGGTTTTTCAAGATGACGGGTTACACATCAAAGGAAGTCATAGGGAGAAACTGCCGGTTTTTGCAGGGAGCAGACACGGATCCGGATGATGTGGCAAAGATAAGGGAAGCCTTACAAACGGGTCATACCTACTGTGGAAGGTTACTGAATTACAAGAAGGACGGCACTCCCTTTTGGAACCTTCTCACTATTGCCCCAATCAAGGACCACGATGGCAGAGTCCTTAAATTTATAGGAATGCAAGTGGAAGTTAGCAAGCATACAGAGGGGACGAAGGAGAAGATGCTACGTCCCAATGGATTACCCGAATCCTTGATTCGATACGATTCTCGTCAGAAAGAGAAGGCAAACGGTACAGTATCTGAGTTGTTGCTGGCTGTGAGGAGGCCACGGGCACTGAGTGAATCAGCAGGCCGGCCGTTGATCAGAAAGTCAGCATCCGGTGATGATGTTGAAGAGAAACCAGAAAAGTCATCGAGGAGAAAATCTGAGAGTGTGTCCTCTTTTAGACGCAAATCACATGCAGGTGACACAAGTTCAATGGAGAGAATCACTGAGCTACCTGAAAAGAAACACAAGACATCTCGTCGCCGTTCCTTCATGGGGTTCATCAGAAAAAGTCAGTCGAACTTTGGAAGCTTCAATGACGAAGGTGTTATTGAGGATAGTTCTGAGAATAGTGACGAGGATGATGATGAGAGGTCTGGTAGTTTTGATGGCAAAGTAAAGAAGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATTGAGAAGAACTTCGTTATTACTGATCCCAGGCTGCCAGATAACCCAATTATTTTTGCATCTGACAGCTTCTTGGAGCTTACGGAGTATAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGGCCTGAAACTGATCCAGCAACAGTGAGAAAAATTAGAGAGGCCATTGACACTCAAACTGACGTCACGGTGCAACTCATTAATTATACAAAGAGTGGTAAAAAGTTCTGGAATTTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAGGTACAGTACTTCATTGGAGTTCAACTTGATGGTAGTCAACACGTGGAGCCTCTTCACAACCGCATTGCAGAAAATACTGCTAAAGAGGGAGAACAATTGGTGAAGGAAACTGCTGAAAATGTCGATGATGCATTGAGAGAACTTCCAGATGCTAATTTGAAACCAGAAGATTTATGGATGAATCATTCAAAAGTGGTTCACCCGAAACCACATAGGAGGGATGAAGCTGCATGGAAAGCTATTCAGAAGATCCTAGAAAGTGGAGAGCAGATAGGCTTGAATCATTTTAGGCCAGTTAAACCTTTGGGATCAGGAGATACTGGCAGTGTCTATCTGGTGGAGTTAGGTGAAACTGGCCAATATTTTGCCATGAAGGCTATGGAGAAGGGTATTATGCTCAATCGTAACAAGGTGCACAGAGCTTGCACAGAGAGAGAGATCCTGGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACCGATTACTGTTCTGGTGGAGAACTGTTCCTTCTTCTTGACCGACAGCCAGCTAAGGTTCTCAGGGAAGATGCAGTGAGATTTTATGCTGCGGAAGTAGTTGTTGCATTGGAGTATCTTCATTGTCAAGGTATAATATATCGGGATTTGAAGCCAGAAAATGTGTTACTACAAAGCAGTGGACACGTGTCCCTAACAGATTTTGATTTGTCATGTTTGACATCTTGCAAACCACAGCTTCTAGTTCCATCTATAAATGAAAAGAAGAAAGCACAGAAAAGCCAACAACCTCCAATATTTATGGCAGAACCTATGAGAGCATCAAACTCTTTTGTGGGCACAGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGCCATACTAGTGCCGTGGATTGGTGGGCTCTTGGAATTCTTCTATACGAAATGTTTTTTGGATATACACCATTCAGGGGAAAGACCAGGCAAAGAACATTTACAAATATTCTGCATAAGGACCTTAAATTTCCCAAAAGTAAACAGGTAAGTTTCAGTGCAAAGCAATTAATGTATCGGTTGCTGAACAGAGACCCCAAAAGCAGATTGGGTTCAAGAGAAGGAGCAAATGAAATTAAGAACCATCCATTCTTTCGGGGTGTCAATTGGGCCCTAGTTCGTTGCACGAAACCTCCTGAGCTGGATGCACCTCTCTTCGAAATAACTGAAGAAGAAAAGGAAGCCAAGTTTGAAGATCAAGTGCAAGAGCAAATGAGCGTCTTCTGA 2949 0.4724 MEQRVRRMEAFPRDQRGSLEVFNPSSSYSNEKPVNSPLRTQSTWKTWMESRAEEPPEEQQRGGSDEVTATSWMALKDSTPPLPAQTLAAVLGEPPAEVGNAAKRAAEWGLVLKTDTETGKPQGVAVRTSGGEEPSAKVTGGSRRDSGNSVRSSGESSDDGREYRGGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDVAKIREALQTGHTYCGRLLNYKKDGTPFWNLLTIAPIKDHDGRVLKFIGMQVEVSKHTEGTKEKMLRPNGLPESLIRYDSRQKEKANGTVSELLLAVRRPRALSESAGRPLIRKSASGDDVEEKPEKSSRRKSESVSSFRRKSHAGDTSSMERITELPEKKHKTSRRRSFMGFIRKSQSNFGSFNDEGVIEDSSENSDEDDDERSGSFDGKVKKREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDTQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIAENTAKEGEQLVKETAENVDDALRELPDANLKPEDLWMNHSKVVHPKPHRRDEAAWKAIQKILESGEQIGLNHFRPVKPLGSGDTGSVYLVELGETGQYFAMKAMEKGIMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCSGGELFLLLDRQPAKVLREDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLLVPSINEKKKAQKSQQPPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFFGYTPFRGKTRQRTFTNILHKDLKFPKSKQVSFSAKQLMYRLLNRDPKSRLGSREGANEIKNHPFFRGVNWALVRCTKPPELDAPLFEITEEEKEAKFEDQVQEQMSVF 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02047 982 CDD PAS 466 566 IPR000014 -
Viun11g02047 982 SUPERFAMILY PYP-like sensor domain (PAS domain) 467 566 IPR035965 -
Viun11g02047 982 ProSiteProfiles PAC domain profile. 244 298 IPR000700 -
Viun11g02047 982 SMART pac_2 247 289 IPR001610 -
Viun11g02047 982 SMART pac_2 528 570 IPR001610 -
Viun11g02047 982 SUPERFAMILY Protein kinase-like (PK-like) 636 959 IPR011009 -
Viun11g02047 982 Gene3D Transferase(Phosphotransferase) domain 1 736 951 - -
Viun11g02047 982 SUPERFAMILY PYP-like sensor domain (PAS domain) 191 283 IPR035965 -
Viun11g02047 982 FunFam LOV domain-containing protein 440 604 - -
Viun11g02047 982 ProSiteProfiles Protein kinase domain profile. 652 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02047 982 NCBIfam PAS domain S-box protein 476 566 IPR000014 -
Viun11g02047 982 NCBIfam PAS domain S-box protein 197 291 IPR000014 -
Viun11g02047 982 ProSiteProfiles PAS repeat profile. 170 241 IPR000014 -
Viun11g02047 982 SMART pas_2 453 522 IPR000014 -
Viun11g02047 982 SMART pas_2 172 241 IPR000014 -
Viun11g02047 982 FunFam Putative LOV domain-containing protein 184 340 - -
Viun11g02047 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 773 785 IPR008271 GO:0004672|GO:0006468
Viun11g02047 982 MobiDBLite consensus disorder prediction 416 447 - -
Viun11g02047 982 Gene3D Phosphorylase Kinase; domain 1 651 735 - -
Viun11g02047 982 Pfam Protein kinase domain 655 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02047 982 MobiDBLite consensus disorder prediction 347 395 - -
Viun11g02047 982 Gene3D PAS domain 184 340 - -
Viun11g02047 982 CDD STKc_phototropin_like 651 958 - -
Viun11g02047 982 MobiDBLite consensus disorder prediction 19 48 - -
Viun11g02047 982 ProSiteProfiles PAS repeat profile. 451 524 IPR000014 -
Viun11g02047 982 MobiDBLite consensus disorder prediction 337 400 - -
Viun11g02047 982 Pfam PAS domain 191 287 IPR000014 -
Viun11g02047 982 Pfam PAS domain 474 566 IPR000014 -
Viun11g02047 982 PANTHER FLIPPASE KINASE 1-RELATED 568 964 - -
Viun11g02047 982 Gene3D PAS domain 440 604 - -
Viun11g02047 982 FunFam LOV domain-containing protein 651 735 - -
Viun11g02047 982 FunFam Putative LOV domain-containing protein 736 951 - -
Viun11g02047 982 CDD PAS 197 286 IPR000014 -
Viun11g02047 982 MobiDBLite consensus disorder prediction 113 167 - -
Viun11g02047 982 ProSiteProfiles PAC domain profile. 525 579 IPR000700 -
Viun11g02047 982 ProSitePatterns Protein kinases ATP-binding region signature. 658 681 IPR017441 GO:0005524
Viun11g02047 982 MobiDBLite consensus disorder prediction 1 80 - -
Viun11g02047 982 SMART serkin_6 652 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02047 982 Coils Coil 583 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02047 Viun-Chr11 35962159 35971569 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02047 10 982 AGC Kinase Gene Family AT3G45780 69.648 0.0 1337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Viun11g02047 Pkinase 5.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02047 K20715 - gmx:100804524 1742.24