Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02045 ATGAGAGTGAGAAGAATGGAAGCATTTCCGAGAGACCAACGTGGCTCGCTCGAAGTGTTCAACCCTTCGTCTTCTTACTCCAACGAGAAGCCGGTCAACTCGCCATTGCGCACTCAATCCACGTGGAAGACGTGGATGGAGTCACGCGCCGAGGAGCCACCGGAGGAGCAGCAACGCGGCGGTTCCGATGAGGTCACAGCCACGTCGTGGATGGCGCTAAAGGACTCCACTCCGCCGCTGCCAGCACAGACACTCGCCGCGGTGCTAGGCGAGCCTCCGGCGGAGGTCGGAAATGCCGCGAAGCGCGCCGCGGAATGGGGTCTGGTGCTGAAGACGGACACGGAAACCGGAAAGCCGCAGGGAGTGGCGGTTCGGACCTCCGGCGGGGAGGAGCCGAGCGCGAAGGTGACCGGTGGGTCGAGGAGGGACTCCGGGAACTCCGTTCGGAGCTCCGGCGAGTCCTCCGACGACGGGAGGGAGTACCGGGGAGGAATCCCGAGGGTTTCGGAGGACCTGAGGGACGCTTTGTCGGCGTTTCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATAATGTATGCCAGTGCCGGGTTTTTCAAGATGACGGGTTACACATCAAAGGAAGTCATAGGGAGAAACTGCCGGTTTTTGCAGGGAGCAGACACGGATCCGGATGATGTGGCAAAGATAAGGGAAGCCTTACAAACGGGTCATACCTACTGTGGAAGGTTACTGAATTACAAGAAGGACGGCACTCCCTTTTGGAACCTTCTCACTATTGCCCCAATCAAGGACCACGATGGCAGAGTCCTTAAATTTATAGGAATGCAAGTGGAAGTTAGCAAGCATACAGAGGGGACGAAGGAGAAGATGCTACGTCCCAATGGATTACCCGAATCCTTGATTCGATACGATTCTCGTCAGAAAGAGAAGGCAAACGGTACAGTATCTGAGTTGTTGCTGGCTGTGAGGAGGCCACGGGCACTGAGTGAATCAGCAGGCCGGCCGTTGATCAGAAAGTCAGCATCCGGTGATGATGTTGAAGAGAAACCAGAAAAGTCATCGAGGAGAAAATCTGAGAGTGTGTCCTCTTTTAGACGCAAATCACATGCAGGTGACACAAGTTCAATGGAGAGAATCACTGAGCTACCTGAAAAGAAACACAAGACATCTCGTCGCCGTTCCTTCATGGGGTTCATCAGAAAAAGTCAGTCGAACTTTGGAAGCTTCAATGACGAAGGTGTTATTGAGGATAGTTCTGAGAATAGTGACGAGGATGATGATGAGAGGTCTGGTAGTTTTGATGGCAAAGTAAAGAAGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATTGAGAAGAACTTCGTTATTACTGATCCCAGGCTGCCAGATAACCCAATTATTTTTGCATCTGACAGCTTCTTGGAGCTTACGGAGTATAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGGCCTGAAACTGATCCAGCAACAGTGAGAAAAATTAGAGAGGCCATTGACACTCAAACTGACGTCACGGTGCAACTCATTAATTATACAAAGAGTGGTAAAAAGTTCTGGAATTTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAGGTACAGTACTTCATTGGAGTTCAACTTGATGGTAGTCAACACGTGGAGCCTCTTCACAACCGCATTGCAGAAAATACTGCTAAAGAGGGAGAACAATTGGTGAAGGAAACTGCTGAAAATGTCGATGATGCATTGAGAGAACTTCCAGATGCTAATTTGAAACCAGAAGATTTATGGATGAATCATTCAAAAGTGGTTCACCCGAAACCACATAGGAGGGATGAAGCTGCATGGAAAGCTATTCAGAAGATCCTAGAAAGTGGAGAGCAGATAGGCTTGAATCATTTTAGGCCAGTTAAACCTTTGGGATCAGGAGATACTGGCAGTGTCTATCTGGTGGAGTTAGGTGAAACTGGCCAATATTTTGCCATGAAGGCTATGGAGAAGGGTATTATGCTCAATCGTAACAAGGTGCACAGAGCTTGCACAGAGAGAGAGATCCTGGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACCGATTACTGTTCTGGTGGAGAACTGTTCCTTCTTCTTGACCGACAGCCAGCTAAGGTTCTCAGGGAAGATGCAGTGAGATTTTATGCTGCGGAAGTAGTTGTTGCATTGGAGTATCTTCATTGTCAAGGTATAATATATCGGGATTTGAAGCCAGAAAATGTGTTACTACAAAGCAGTGGACACGTGTCCCTAACAGATTTTGATTTGTCATGTTTGACATCTTGCAAACCACAGCTTCTAGTTCCATCTATAAATGAAAAGAAGAAAGCACAGAAAAGCCAACAACCTCCAATATTTATGGCAGAACCTATGAGAGCATCAAACTCTTTTGTGGGCACAGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGCCATACTAGTGCCGTGGATTGGTGGGCTCTTGGAATTCTTCTATACGAAATGTTTTTTGGATATACACCATTCAGGGGAAAGACCAGGCAAAGAACATTTACAAATATTCTGCATAAGGACCTTAAATTTCCCAAAAGTAAACAGGTAAGTTTCAGTGCAAAGCAATTAATGTATCGGTTGCTGAACAGAGACCCCAAAAGCAGATTGGGTTCAAGAGAAGGAGCAAATGAAATTAAGAACCATCCATTCTTTCGGGGTGTCAATTGGGCCCTAGTTCGTTGCACGAAACCTCCTGAGCTGGATGCACCTCTCTTCGAAATAACTGAAGAAGAAAAGGAAGCCAAGTTTGAAGATCAAGTGCAAGAGCAAATGAGCGTCTTCTGA 2943 0.472 MRVRRMEAFPRDQRGSLEVFNPSSSYSNEKPVNSPLRTQSTWKTWMESRAEEPPEEQQRGGSDEVTATSWMALKDSTPPLPAQTLAAVLGEPPAEVGNAAKRAAEWGLVLKTDTETGKPQGVAVRTSGGEEPSAKVTGGSRRDSGNSVRSSGESSDDGREYRGGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDVAKIREALQTGHTYCGRLLNYKKDGTPFWNLLTIAPIKDHDGRVLKFIGMQVEVSKHTEGTKEKMLRPNGLPESLIRYDSRQKEKANGTVSELLLAVRRPRALSESAGRPLIRKSASGDDVEEKPEKSSRRKSESVSSFRRKSHAGDTSSMERITELPEKKHKTSRRRSFMGFIRKSQSNFGSFNDEGVIEDSSENSDEDDDERSGSFDGKVKKREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDTQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIAENTAKEGEQLVKETAENVDDALRELPDANLKPEDLWMNHSKVVHPKPHRRDEAAWKAIQKILESGEQIGLNHFRPVKPLGSGDTGSVYLVELGETGQYFAMKAMEKGIMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCSGGELFLLLDRQPAKVLREDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLLVPSINEKKKAQKSQQPPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFFGYTPFRGKTRQRTFTNILHKDLKFPKSKQVSFSAKQLMYRLLNRDPKSRLGSREGANEIKNHPFFRGVNWALVRCTKPPELDAPLFEITEEEKEAKFEDQVQEQMSVF 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02045 980 CDD PAS 195 284 IPR000014 -
Viun11g02045 980 MobiDBLite consensus disorder prediction 1 78 - -
Viun11g02045 980 FunFam Putative LOV domain-containing protein 182 338 - -
Viun11g02045 980 MobiDBLite consensus disorder prediction 345 393 - -
Viun11g02045 980 FunFam LOV domain-containing protein 438 602 - -
Viun11g02045 980 CDD STKc_phototropin_like 649 956 - -
Viun11g02045 980 ProSiteProfiles PAC domain profile. 242 296 IPR000700 -
Viun11g02045 980 Gene3D Phosphorylase Kinase; domain 1 649 733 - -
Viun11g02045 980 SMART serkin_6 650 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02045 980 Pfam Protein kinase domain 653 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02045 980 ProSitePatterns Protein kinases ATP-binding region signature. 656 679 IPR017441 GO:0005524
Viun11g02045 980 Coils Coil 581 601 - -
Viun11g02045 980 MobiDBLite consensus disorder prediction 111 165 - -
Viun11g02045 980 PANTHER FLIPPASE KINASE 1-RELATED 323 962 - -
Viun11g02045 980 Gene3D PAS domain 182 338 - -
Viun11g02045 980 FunFam Putative LOV domain-containing protein 734 949 - -
Viun11g02045 980 Gene3D Transferase(Phosphotransferase) domain 1 734 949 - -
Viun11g02045 980 SUPERFAMILY PYP-like sensor domain (PAS domain) 465 564 IPR035965 -
Viun11g02045 980 FunFam LOV domain-containing protein 649 733 - -
Viun11g02045 980 Pfam PAS domain 472 564 IPR000014 -
Viun11g02045 980 Pfam PAS domain 189 285 IPR000014 -
Viun11g02045 980 NCBIfam PAS domain S-box protein 195 289 IPR000014 -
Viun11g02045 980 NCBIfam PAS domain S-box protein 474 564 IPR000014 -
Viun11g02045 980 SUPERFAMILY PYP-like sensor domain (PAS domain) 189 281 IPR035965 -
Viun11g02045 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 771 783 IPR008271 GO:0004672|GO:0006468
Viun11g02045 980 ProSiteProfiles PAS repeat profile. 168 239 IPR000014 -
Viun11g02045 980 CDD PAS 464 564 IPR000014 -
Viun11g02045 980 SMART pas_2 170 239 IPR000014 -
Viun11g02045 980 SMART pas_2 451 520 IPR000014 -
Viun11g02045 980 MobiDBLite consensus disorder prediction 335 398 - -
Viun11g02045 980 ProSiteProfiles PAC domain profile. 523 577 IPR000700 -
Viun11g02045 980 ProSiteProfiles Protein kinase domain profile. 650 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g02045 980 SUPERFAMILY Protein kinase-like (PK-like) 634 957 IPR011009 -
Viun11g02045 980 ProSiteProfiles PAS repeat profile. 449 522 IPR000014 -
Viun11g02045 980 Gene3D PAS domain 438 602 - -
Viun11g02045 980 SMART pac_2 245 287 IPR001610 -
Viun11g02045 980 SMART pac_2 526 568 IPR001610 -
Viun11g02045 980 MobiDBLite consensus disorder prediction 414 445 - -
Viun11g02045 980 MobiDBLite consensus disorder prediction 17 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02045 Viun-Chr11 35961688 35971569 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02045 9 980 AGC Kinase Gene Family AT3G45780 69.718 0.0 1337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Viun11g02045 Pkinase 5.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02045 K20715 - gmx:100804524 1742.24